Browse Element(s) Details


OsAffx.18809.1.S1_at

Description tigr:9639.m01134
TID=OsAffx.18809.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AF509753 barley stem rust resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1189011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11840NANA11+6567391..6569030hypothetical protein
LOC_Os11g11850NANA11+6569752..6570917hypothetical protein
LOC_Os11g11860NANA11+6577193..6580304retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g11870Os.49724.1.A1_at1/1111+6583989..6585195hypothetical protein
LOC_Os11g11880OsAffx.24795.1.S1_at1/1111+6586654..6590633retrotransposon protein, putative, LINE subclass
LOC_Os11g11880OsAffx.8098.1.S1_at1/1111+6586654..6590633retrotransposon protein, putative, LINE subclass
LOC_Os11g11890OsAffx.18809.1.S1_at11/1111+6591843..6598479Protein kinase domain containing protein, expressed
LOC_Os11g11890Os.31112.3.S1_at1/1111+6591843..6598479Protein kinase domain containing protein, expressed
LOC_Os11g11900OsAffx.18810.1.S1_at10/1111+6599820..6601191hypothetical protein
LOC_Os11g11920Os.56301.1.S1_at11/1111+6601895..6611496Nitrate-induced NOI protein, expressed
LOC_Os11g11930NANA11+6613654..6613966hypothetical protein
LOC_Os11g11940Os.20102.1.S1_s_at11/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940OsAffx.18811.1.S1_at9/1111+6617193..6624459NB-ARC domain containing protein, expressed
LOC_Os11g11940Os.20102.1.S1_at6/1111+6617193..6624459NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18809.1.S1_at--55--6891Chr11:6597441..6597465 (25 bp)
GTATTTGCCTACAGGGAGTCTTGAC
LOC_Os11g11890
OsAffx.18809.1.S1_at--1058--2431Chr11:6597717..6597741 (25 bp)
AAAATGGGACATGCGCTTCAAAATT
LOC_Os11g11890
OsAffx.18809.1.S1_at--572--2771Chr11:6597786..6597810 (25 bp)
AAGACCCATTATTCATCTAGATCTG
LOC_Os11g11890
OsAffx.18809.1.S1_at--298--451Chr11:6597800..6597824 (25 bp)
ATCTAGATCTGAAACCTGGCAATGT
LOC_Os11g11890
OsAffx.18809.1.S1_at--502--7011Chr11:6597905..6597929 (25 bp)
GTACTTTAACAGTTGTCGGATCCAT
LOC_Os11g11890
OsAffx.18809.1.S1_at--616--7951Chr11:6597922..6598057 (25 bp)
GGATCCATAGGATACATTGCCCCGG
LOC_Os11g11890
OsAffx.18809.1.S1_at--458--71Chr11:6598048..6598072 (25 bp)
ATTGCCCCGGAGTATCGTTACAGCG
LOC_Os11g11890
OsAffx.18809.1.S1_at--997--2271Chr11:6598319..6598343 (25 bp)
AAATGCCACAGATAGCTTCCAACTA
LOC_Os11g11890
OsAffx.18809.1.S1_at--1138--911Chr11:6598355..6598379 (25 bp)
AGGCAAACTGCCTCCAAGAAGTAAA
LOC_Os11g11890
OsAffx.18809.1.S1_at--490--2891Chr11:6598380..6598404 (25 bp)
AAGGTGCATCGATATTGCGCTTGCT
LOC_Os11g11890
OsAffx.18809.1.S1_at--100--10711Chr11:6598394..6598418 (25 bp)
TTGCGCTTGCTTGCGTAGACAAAAA
LOC_Os11g11890
Target Sequence 
GTATTTGCCTACAGGGAGTCTTGACAAGTATATTTATGGTGAATCCAATGAATTAAAATGGGACATGCGCTTCAAAATTA
TTGAAGGGATATGTCAGGGTTTAAAGTTCTTACATGAGTTGAAAAGACCCATTATTCATCTAGATCTGAAACCTGGCAAT
GTATTGTTGGATGATAATATGATGCCAAAAATTGCAGATTTTGGCCTATCAAGGCTCTTAGGCGAAGAACAAACACGAAC
TCGTACTTTAACAGTTGTCGGATCCATAGGATACATTGCCCCGGAGTATCGTTACAGCGGTGAAATCTCAACCAAATCAG
ACATATTCAGCTTGGGTGTTTTGATAATCGAGATAGTGACTGGGTTAAAAGTCAATTCGAGTAGCCAAGATGTTACTTCA
AAGGGCTTCATTGAAAATGTACGTAATAACTGGGCGAAAATGCCACAGATAGCTTCCAACTATCCATTATTGGAGGCAAA
CTGCCTCCAAGAAGTAAAAAGGTGCATCGATATTGCGCTTGCTTGCGTAGACAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis