Browse Element(s) Details


OsAffx.18827.1.S1_at

Description tigr:9639.m01235
TID=OsAffx.18827.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1344011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13410OsAffx.18825.1.S1_at11/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13410OsAffx.18825.1.S1_x_at11/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13410Os.19028.1.S1_at10/1111+7337563..7341443NB-ARC domain containing protein, expressed
LOC_Os11g13420Os.27357.1.A1_at11/1111+7341826..7343758RNase3 domain containing protein, expressed
LOC_Os11g13430OsAffx.18826.1.S1_at11/1111+7351627..7355065NB-ARC domain containing protein
LOC_Os11g13440OsAffx.18827.1.S1_at11/1111+7360559..7363322NB-ARC domain containing protein
LOC_Os11g13459OsAffx.20387.1.S1_x_at3/1111+7369479..7375466retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g13480NANA11+7377327..7379480hypothetical protein
LOC_Os11g13490Os.54455.1.S1_at11/1111+7387208..7390835expressed protein
LOC_Os11g13490OsAffx.7102.1.S1_at9/1111+7387208..7390835expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18827.1.S1_at--818--8811Chr11:7362730..7362754 (25 bp)
TGTTGGACGATCAGGAACTCCCATC
LOC_Os11g13440
OsAffx.18827.1.S1_at--86--671Chr11:7362828..7362852 (25 bp)
ATGAAGTTGTCCCATGTCCGTGCAA
LOC_Os11g13440
OsAffx.18827.1.S1_at--5--8771Chr11:7362866..7362890 (25 bp)
TGTAGATGGCTGGACGATTCCTCCA
LOC_Os11g13440
OsAffx.18827.1.S1_at--21--211Chr11:7362892..7362916 (25 bp)
ATTTGGACCTACCTGTTCTTCGAGT
LOC_Os11g13440
OsAffx.18827.1.S1_at--223--4831Chr11:7362951..7362975 (25 bp)
GCTCATCTCGATTGCATTCCAAGTT
LOC_Os11g13440
OsAffx.18827.1.S1_at--1111--4931Chr11:7363012..7363036 (25 bp)
GCATTGATAGTCTACCAGCCCAAAT
LOC_Os11g13440
OsAffx.18827.1.S1_at--462--5231Chr11:7363047..7363071 (25 bp)
GAATATTTGCAGACGCTCGATGTAC
LOC_Os11g13440
OsAffx.18827.1.S1_at--1016--3751Chr11:7363062..7363086 (25 bp)
CTCGATGTACGCTCAACTCTAGTGA
LOC_Os11g13440
OsAffx.18827.1.S1_at--992--3251Chr11:7363075..7363099 (25 bp)
CAACTCTAGTGAGACGACTGCCAGA
LOC_Os11g13440
OsAffx.18827.1.S1_at--46--331Chr11:7363149..7363173 (25 bp)
ATACTACTGGATGGGTTTGGCAACA
LOC_Os11g13440
OsAffx.18827.1.S1_at--694--7851Chr11:7363162..7363186 (25 bp)
GGTTTGGCAACATGGAATCCCTTCA
LOC_Os11g13440
Target Sequence 
TGTTGGACGATCAGGAACTCCCATCTTCAAAGACAAGGATTCGACGTCTCTCTATTTGGAACAAGCAACAATATCCTACG
TTCATATCACAAGAAAGCATGAAGTTGTCCCATGTCCGTGCAATTAGTATATGCCATGTAGATGGCTGGACGATTCCTCC
AGATTTGGACCTACCTGTTCTTCGAGTGTTAGATCTAGAGGGTTGTAGTGCTTTGAGGAATGCTCATCTCGATTGCATTC
CAAGTTTATTTCATCTTAGATATCTAGGGTTATCTAGGACAAGCATTGATAGTCTACCAGCCCAAATTGGTAAGCTGGAA
TATTTGCAGACGCTCGATGTACGCTCAACTCTAGTGAGACGACTGCCAGAAAGTATTCTTCACCCAAAGAGATTGATGCG
CCTTGTTGGTGATGAACTCATACTACTGGATGGGTTTGGCAACATGGAATCCCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18827.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis