Browse Element(s) Details


OsAffx.18870.1.S1_at

Description tigr:9639.m01450
TID=OsAffx.18870.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g156109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15580OsAffx.30995.1.S1_at10/1111+8831415..8832011hypothetical protein
LOC_Os11g15590OsAffx.18868.5.S1_x_at10/1111+8833960..8837043hypothetical protein
LOC_Os11g15590Os.46444.1.S1_x_at1/1111+8833960..8837043hypothetical protein
LOC_Os11g15600OsAffx.18869.1.S1_at11/1111+8849548..8850804hypothetical protein
LOC_Os11g15610OsAffx.18870.1.S1_at9/1111+8852109..8853271hypothetical protein
LOC_Os11g15620OsAffx.18871.1.S1_at11/1111+8855011..8857361F-box domain containing protein
LOC_Os11g15630NANA11+8863841..8864986retrotransposon protein, putative, unclassified
LOC_Os11g15640OsAffx.20100.1.S1_x_at11/1111+8866149..8868264Zinc knuckle family protein
LOC_Os11g15640OsAffx.20100.3.S1_x_at8/1111+8866149..8868264Zinc knuckle family protein
LOC_Os11g15640OsAffx.20100.2.S1_x_at4/1111+8866149..8868264Zinc knuckle family protein
LOC_Os11g15649Os.51910.1.S1_x_at1/1111+8872531..8873098NA
LOC_Os11g15649Os.51910.1.S1_at1/1111+8872531..8873098NA
LOC_Os11g15660OsAffx.18873.1.S1_at11/1111+8875119..8875556hypothetical protein
LOC_Os11g15670OsAffx.18874.1.S1_at11/1111+8877437..8880094Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18870.1.S1_at--425--111Chr11:8853208..8853232 (25 bp)
ATTCTCACCGTGCAACAGTTAGGGA
LOC_Os11g15610
OsAffx.18870.1.S1_at--782--1071Chr11:8853188..8853212 (25 bp)
AGGGAGCAGTACACCAGGCGGCAAC
LOC_Os11g15610
OsAffx.18870.1.S1_at--728--1011NONE
AGGTTCCAGTCGGTGAAGTGCATCG
NONE
OsAffx.18870.1.S1_at--135--2891Chr11:8852606..8852630 (25 bp)
AAGGGACTCCTGATGGTGTCAGCGC
LOC_Os11g15610
OsAffx.18870.1.S1_at--890--511Chr11:8852576..8852600 (25 bp)
ATCGATGCACTTGACCCAGAACAGT
LOC_Os11g15610
OsAffx.18870.1.S1_at--1002--4751NONE
GCTGCAAGGTGTGGTCATCATGGAA
NONE
OsAffx.18870.1.S1_at--183--6631Chr11:8852260..8852284 (25 bp)
GTTGGGATGCCAAAGTTATTGCCAT
LOC_Os11g15610
OsAffx.18870.1.S1_at--873--8612Chr11:8852226..8852250 (25 bp)
TGGTGACACGCGCTACACGGTGCAA
LOC_Os11g15610
OsAffx.18870.1.S1_at--187--3352Chr11:8852211..8852235 (25 bp)
CACGGTGCAAGAGCGGTCCGGCAAA
LOC_Os11g15610
OsAffx.18870.1.S1_at--750--7251Chr11:8852196..8852220 (25 bp)
GTCCGGCAAATGTGATGCACGCGGT
LOC_Os11g15610
OsAffx.18870.1.S1_at--674--3892Chr11:8852140..8852164 (25 bp)
CTGTGGTGGTGCGAAGCTTTTCCCA
LOC_Os11g15610
Target Sequence 
ATTCTCACCGTGCAACAGTTAGGGAGCAGTACACCAGGCGGCAACACGAACAAAACTATGGGTGGAGAGGTTCCAGTCGG
TGAAGTGCATCGGGGCAGCGTAGACAAGGGACTCCTGATGGTGTCAGCGCCCACCATCGATGCACTTGACCCAGAACAGT
GGCTGCAAGGTGTGGTCATCATGGAAGAGGCTAACGCGGGGAGGAATGGTTGGGATGCCAAAGTTATTGCCATGGGGCCC
ACTGGTGACACGCGCTACACGGTGCAAGAGCGGTCCGGCAAATGTGATGCACGCGGTATGGCTGAGCACGGGCGGTGCAT
GGACACAGCTGTGGTGGTGCGAAGCTTTTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis