Browse Element(s) Details


OsAffx.18871.1.S1_at

Description tigr:9639.m01451
TID=OsAffx.18871.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1562011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g15580OsAffx.30995.1.S1_at10/1111+8831415..8832011hypothetical protein
LOC_Os11g15590OsAffx.18868.5.S1_x_at10/1111+8833960..8837043hypothetical protein
LOC_Os11g15590Os.46444.1.S1_x_at1/1111+8833960..8837043hypothetical protein
LOC_Os11g15600OsAffx.18869.1.S1_at11/1111+8849548..8850804hypothetical protein
LOC_Os11g15610OsAffx.18870.1.S1_at9/1111+8852109..8853271hypothetical protein
LOC_Os11g15620OsAffx.18871.1.S1_at11/1111+8855011..8857361F-box domain containing protein
LOC_Os11g15630NANA11+8863841..8864986retrotransposon protein, putative, unclassified
LOC_Os11g15640OsAffx.20100.1.S1_x_at11/1111+8866149..8868264Zinc knuckle family protein
LOC_Os11g15640OsAffx.20100.3.S1_x_at8/1111+8866149..8868264Zinc knuckle family protein
LOC_Os11g15640OsAffx.20100.2.S1_x_at4/1111+8866149..8868264Zinc knuckle family protein
LOC_Os11g15649Os.51910.1.S1_x_at1/1111+8872531..8873098NA
LOC_Os11g15649Os.51910.1.S1_at1/1111+8872531..8873098NA
LOC_Os11g15660OsAffx.18873.1.S1_at11/1111+8875119..8875556hypothetical protein
LOC_Os11g15670OsAffx.18874.1.S1_at11/1111+8877437..8880094Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18871.1.S1_at--687--5711Chr11:8855670..8855694 (25 bp)
GACTCCTGCACTTGAGAGATTGCCA
LOC_Os11g15620
OsAffx.18871.1.S1_at--298--7551Chr11:8855768..8855792 (25 bp)
GTGGCGATCAAGTTTCATGTGGAAA
LOC_Os11g15620
OsAffx.18871.1.S1_at--1053--31Chr11:8855828..8855852 (25 bp)
ATTGTGTGCTTCTTGGTGGTCTGTC
LOC_Os11g15620
OsAffx.18871.1.S1_at--275--7811Chr11:8855845..8855869 (25 bp)
GGTCTGTCGAACGTCACCAATTTAG
LOC_Os11g15620
OsAffx.18871.1.S1_at--530--10431Chr11:8856599..8856623 (25 bp)
TTATGCGCCCAACGTTTAGCAAGCT
LOC_Os11g15620
OsAffx.18871.1.S1_at--719--2991Chr11:8856640..8856664 (25 bp)
AATGTTTCGGATGCGGATGCTGGCT
LOC_Os11g15620
OsAffx.18871.1.S1_at--80--9431Chr11:8856665..8856689 (25 bp)
TCGGCCCATTGGTTTACATTTTGAG
LOC_Os11g15620
OsAffx.18871.1.S1_at--385--8891Chr11:8856686..8856710 (25 bp)
TGAGGAGCTCTCCAGTACTAGAGAA
LOC_Os11g15620
OsAffx.18871.1.S1_at--412--2711Chr11:8856709..8856733 (25 bp)
AAGCTTACTCTTCAACTGTATGAGG
LOC_Os11g15620
OsAffx.18871.1.S1_at--620--2471Chr11:8856964..8856988 (25 bp)
AACACTTGTGGTGTACCTCGCAAGA
LOC_Os11g15620
OsAffx.18871.1.S1_at--1145--8971Chr11:8856999..8857023 (25 bp)
TGAACGTACGGAGTTGTGGTCTTTT
LOC_Os11g15620
Target Sequence 
GACTCCTGCACTTGAGAGATTGCCATCATTATCAACAGCATTTGTCAGGCTGGATGATCGTTGTGAAGACTATTGCTTAC
ACAGTTACTATGGGGATTGTGGCGATCAAGTTTCATGTGGAAAATACTGCACTAGATTCTATGATGTCCATGATGATGAT
TGTGTGCTTCTTGGTGGTCTGTCGAACGTCACCAATTTAGAGTTGATAACTTCACCTAAAGTGTTCATTGTCAGAAAGGA
TTTGCTTATGCGCCCAACGTTTAGCAAGCTAAAAACATTATTGCTTAATGTTTCGGATGCGGATGCTGGCTTCGGCCCAT
TGGTTTACATTTTGAGGAGCTCTCCAGTACTAGAGAAGCTTACTCTTCAACTGTATGAGGAACCAAAAGCTAAGATAGAA
ACAGATGGAAGCTGCAACCTAGAGGAGCAATTGGTGGCATCCAAGAAACTGAAAGTAGTTGAAATCAAATATTCGAAAAT
TGTAGTGCTTTGCAGAGTTTTACAGATTCTCAACACTTGTGGTGTACCTCGCAAGAAAATTAACATTGAACGTACGGAGT
TGTGGTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis