Browse Element(s) Details


OsAffx.18887.1.S1_at

Description tigr:9637.m01206
TID=OsAffx.18887.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1691011/11hypothetical protein
LOC_Os09g148703/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16870Os.27691.2.S1_x_at1/1111+9336407..9342380retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g16870Os.27691.1.S1_x_at1/1111+9336407..9342380retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g16890Os.45976.1.S1_x_at2/1111+9347096..9349083transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16900NANA11+9350551..9353360transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16910OsAffx.18887.1.S1_at11/1111+9360571..9361527hypothetical protein
LOC_Os11g16920NANA11+9363409..9367464retrotransposon protein, putative, unclassified
LOC_Os11g16930OsAffx.12179.1.S1_at2/1111+9369774..9371977transposon protein, putative, unclassified
LOC_Os11g16930OsAffx.12179.1.S1_x_at1/1111+9369774..9371977transposon protein, putative, unclassified
LOC_Os11g16940Os.46306.1.S1_x_at1/1111+9379397..9379666transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16950NANA11+9382753..9384277transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g16960OsAffx.18888.1.S1_at10/1111+9386416..9387794enoyl-CoA hydratase/isomerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18887.1.S1_at--1061--6092Chr11:9360927..9360951 (25 bp)
GAGTGAAGTCTCCATGCGTATGTTG
LOC_Os11g16910
OsAffx.18887.1.S1_at--735--2052Chr11:9361069..9361093 (25 bp)
ACTTCTTTAGTAGCAATCCTCCTTG
LOC_Os11g16910
OsAffx.18887.1.S1_at--925--4212Chr11:9361109..9361133 (25 bp)
CCGCTGCTTTTACCTTGCCTGGAGG
LOC_Os11g16910
OsAffx.18887.1.S1_at--421--2972Chr11:9361221..9361245 (25 bp)
AATGTGCACGTCACTTACTGTTGCC
LOC_Os11g16910
OsAffx.18887.1.S1_at--507--1972Chr11:9361237..9361261 (25 bp)
ACTGTTGCCTTCGTATGCATCATAG
LOC_Os11g16910
OsAffx.18887.1.S1_at--523--4951Chr11:9361327..9361351 (25 bp)
GCATATTTTGCAACCAGTACCGCAT
LOC_Os11g16910
OsAffx.18887.1.S1_at--165--6992Chr11:9361343..9361367 (25 bp)
GTACCGCATTCGCAACTGGTTTATA
LOC_Os11g16910
OsAffx.18887.1.S1_at--617--3371Chr11:9361384..9361408 (25 bp)
CACCTTCCATGGTTGGCTATTGCAA
LOC_Os11g16910
OsAffx.18887.1.S1_at--732--8812Chr11:9361413..9361437 (25 bp)
TGTTGTGTCAGTTTTGTTGCCCATT
LOC_Os11g16910
OsAffx.18887.1.S1_at--462--10851Chr11:9361451..9361475 (25 bp)
TTGGTGAATGGCCACTCCTGAAGCT
LOC_Os11g16910
OsAffx.18887.1.S1_at--38--1592Chr11:9361472..9361496 (25 bp)
AGCTCAGGATTCGATTGCTTGGATC
LOC_Os11g16910
Target Sequence 
GAGTGAAGTCTCCATGCGTATGTTGAANGCTGACCCGGAAGACAAAGGTGAAATCTATAATCTTATAAANACAATCAAAG
ATCAAGTAACTGAGAAAGCAAGGAAGGANATAAGGACNTTGACTNAAACATACACAAGCAACACTTCTTTAGTAGCAATC
CTCCTTGCAACAATCACCTTCGCCGCTGCTTTTACCTTGCCTGGAGGANACAGTAATANTGCTGGAAGTGAGGGGCTTCC
TANCATGNGTAGAAAGCTTGCATTTCANGCATTCTTGATATCTGACACCTNNGCAATGTGCACGTCACTTACTGTTGCCT
TCGTATGCATCATAGCAAGGTGGGAGGATCTTGAGTTCTTGCTTTACTACAGATCTTTTACTAAGAAGCTCATGTGGTTT
GCATATTTTGCAACCAGTACCGCATTCGCAACTGGTTTATATATAGTTTTGGCCCCTCACCTTCCATGGTTGGCTATTGC
AATTTGTGTTGTGTCAGTTTTGTTGCCCATTCTCACTAAGCTTATTGGTGAATGGCCACTCCTGAAGCTCAGGATTCGAT
TGCTTGGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis