Browse Element(s) Details


OsAffx.18924.4.S1_at

Description tigr:9639.m01956
TID=OsAffx.18924.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2188010/11hypothetical protein
LOC_Os07g280306/11transposon protein, putative, unclassified
LOC_Os11g474453/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g339601/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g21830OsAffx.22385.1.S1_x_at7/1111+12054553..12060015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21830Os.46862.1.S1_at3/1111+12054553..12060015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21830OsAffx.20329.1.S1_at1/1111+12054553..12060015retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21840Os.36736.1.S1_x_at2/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840Os.46995.1.S1_x_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840Os.21387.3.S1_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840OsAffx.18435.1.S1_x_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840Os.36736.1.S1_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21840Os.21387.3.S1_x_at1/1111+12062359..12065692retrotransposon protein, putative, unclassified
LOC_Os11g21850OsAffx.1646.1.S1_x_at1/1111+12066462..12071866retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21860OsAffx.31080.1.S1_at11/1111+12072435..12074139hypothetical protein
LOC_Os11g21870Os.45173.1.S1_x_at1/1111+12075131..12078258retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21880OsAffx.18924.4.S1_at10/1111+12078314..12079268hypothetical protein
LOC_Os11g21880OsAffx.18924.2.S1_x_at7/1111+12078314..12079268hypothetical protein
LOC_Os11g21880OsAffx.19842.1.S1_at2/1111+12078314..12079268hypothetical protein
LOC_Os11g21890OsAffx.411.1.S1_at2/1111+12082901..12087291transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g21900OsAffx.13681.1.S1_at1/1111+12091952..12093460retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21910Os.39431.1.S1_x_at1/1111+12097925..12099198retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g21920OsAffx.20497.1.S1_at1/1111+12099832..12100218transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g21930OsAffx.31082.1.S1_at11/1111+12102053..12102473hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18924.4.S1_at--291--3151NONE
AATTCTCGATTTTGCATTTAAAAGG
NONE
OsAffx.18924.4.S1_at--358--2451Chr11:12078470..12078494 (25 bp)
AAAATTCCCCATGTCTGAAAGACAG
LOC_Os11g21880
OsAffx.18924.4.S1_at--265--5574Chr11:8264658..8264682 (25 bp)
GAAAGACAGCTCGATGATACTTCCA
NONE
OsAffx.18924.4.S1_at--397--1414Chr11:8264661..8264685 (25 bp)
AGACAGCTCGATGATACTTCCATTC
NONE
OsAffx.18924.4.S1_at--844--4794Chr11:8264666..8264690 (25 bp)
GCTCGATGATACTTCCATTCAGAAC
NONE
OsAffx.18924.4.S1_at--86--6294Chr11:8264670..8264694 (25 bp)
GATGATACTTCCATTCAGAACATTC
NONE
OsAffx.18924.4.S1_at--459--9651Chr11:12078377..12078401 (25 bp)
TCAGCTTCGGCAGTTTTTCGACAAT
LOC_Os11g21880
OsAffx.18924.4.S1_at--452--4911Chr11:12078374..12078398 (25 bp)
GCTTCGGCAGTTTTTCGACAATGAA
LOC_Os11g21880
OsAffx.18924.4.S1_at--54--5612Chr07:16344097..16344120 (24 bp)
GACAATGAAGGAGTCTTAGCCCTGT
LOC_Os07g28030
OsAffx.18924.4.S1_at--1011--652Chr07:16344101..16344120 (20 bp)
ATGAAGGAGTCTTAGCCCTGTGGGA
LOC_Os07g28030
OsAffx.18924.4.S1_at--92--6031Chr11:12078348..12078372 (25 bp)
GAGTCTTAGCCCTGTGGGAGAACGA
LOC_Os11g21880
Target Sequence 
AATTCTCGATTTTGCATTTAAAAGGTATTACCAGCGAGGCAGACAACGCAAAAACTCAAGAGAACGCATATTTGTCCGCA
ATAAGTGGCCGCTTCCAAAATTCCCCATGTCTGAAAGACAGCTCGATGATACTTCCATTCAGAACATTCAGGCGGACATG
TGTTACTTCATCCACCGTGAGTGCGCACATCAGCTTCGGCAGTTTTTCGACAATGAAGGAGTCTTAGCCCTGTGGGAGAA
CGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18924.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis