Browse Element(s) Details


OsAffx.18934.1.S1_x_at

Description tigr:9631.m04020
TID=OsAffx.18934.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4181011/11hypothetical protein
LOC_Os11g190404/11hypothetical protein
LOC_Os06g325402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41770NANA3+23147133..23153035retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41780Os.52323.1.S1_at2/113+23155784..23161987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41780OsAffx.15645.1.S1_at1/113+23155784..23161987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41780OsAffx.10528.1.S1_x_at1/113+23155784..23161987retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g41790Os.47004.1.S1_at2/113+23162642..23164889retrotransposon protein, putative, unclassified
LOC_Os03g41800OsAffx.20725.5.S1_at11/113+23168393..23172386transposon protein, putative, unclassified
LOC_Os03g41800OsAffx.20725.1.S1_x_at2/113+23168393..23172386transposon protein, putative, unclassified
LOC_Os03g41800OsAffx.20725.3.S1_at2/113+23168393..23172386transposon protein, putative, unclassified
LOC_Os03g41800OsAffx.20725.3.S1_x_at1/113+23168393..23172386transposon protein, putative, unclassified
LOC_Os03g41800OsAffx.20725.1.S1_at1/113+23168393..23172386transposon protein, putative, unclassified
LOC_Os03g41810OsAffx.18934.1.S1_x_at11/113+23173389..23173820hypothetical protein
LOC_Os03g41810OsAffx.15703.1.S1_x_at2/113+23173389..23173820hypothetical protein
LOC_Os03g41820OsAffx.25475.1.S1_at11/113+23176134..23176535hypothetical protein
LOC_Os03g41830OsAffx.5954.5.S1_x_at2/113+23181733..23187253retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41830OsAffx.29791.1.S1_at1/113+23181733..23187253retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g41840OsAffx.5954.3.S1_x_at3/113+23189022..23190362Zinc knuckle family protein
LOC_Os03g41840OsAffx.5954.2.S1_at1/113+23189022..23190362Zinc knuckle family protein
LOC_Os03g41850NANA3+23193880..23195016hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18934.1.S1_x_at--275--3672Chr11:10834175..10834199 (25 bp)
CTTACCCGCTGTCGCCATCGATGGA
LOC_Os11g19040
OsAffx.18934.1.S1_x_at--242--10472Chr11:10834174..10834198 (25 bp)
TTACCCGCTGTCGCCATCGATGGAA
LOC_Os11g19040
OsAffx.18934.1.S1_x_at--850--4212Chr11:10834170..10834194 (25 bp)
CCGCTGTCGCCATCGATGGAAGATG
LOC_Os11g19040
OsAffx.18934.1.S1_x_at--687--4732Chr11:10834168..10834192 (25 bp)
GCTGTCGCCATCGATGGAAGATGAT
LOC_Os11g19040
OsAffx.18934.1.S1_x_at--981--4412Chr11:10834064..10834088 (25 bp)
GCCGGAAGACCCCAACAACAAGATT
NONE
OsAffx.18934.1.S1_x_at--619--2451Chr03:23173514..23173538 (25 bp)
AACAAGATTATTCTGCACCCAGCTT
LOC_Os03g41810
OsAffx.18934.1.S1_x_at--928--10211Chr03:23173506..23173530 (25 bp)
TATTCTGCACCCAGCTTTCATCGAC
LOC_Os03g41810
OsAffx.18934.1.S1_x_at--710--4352Chr06:18927569..18927588 (20 bp)
CCAGCTTTCATCGACGACGGCGGTG
LOC_Os06g32540
OsAffx.18934.1.S1_x_at--183--3931Chr03:23173479..23173503 (25 bp)
CGGCGGTGACCTTGATATTATACAA
LOC_Os03g41810
OsAffx.18934.1.S1_x_at--414--2172Chr06:16050779..16051143 (25 bp)
ACAACTTTCGATATGACCAGACCCC
NONE
OsAffx.18934.1.S1_x_at--771--4392Chr06:18927494..18927513 (20 bp)
GCCAAGAGATGCTCAGTCACCAGTA
LOC_Os06g32540
Target Sequence 
CTTACCCGCTGTCGCCATCGATGGAAGATGATGGCATGATCTACNCGGAGGACTTGGGGNACATGTCTACCCNATGCCCT
TCCCCCCNTTCNGACGTNGANGATCTAAATCCGCCGGAAGACCCCAACAACAAGATTATTCTGCACCCAGCTTTCATCGA
CGACGGCGGTGACCTTGATATTATACAAGAGGACATTTACAACTTTCGATATGACCAGACCCCGCCAAGAGATGCTCAGT
CACCAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18934.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis