Browse Element(s) Details


OsAffx.18961.1.S1_at

Description tigr:9639.m01927
TID=OsAffx.18961.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2053011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20510OsAffx.22699.1.S1_x_at2/1111+11858988..11865206retrotransposon protein, putative, unclassified
LOC_Os11g20510OsAffx.18275.1.S1_x_at1/1111+11858988..11865206retrotransposon protein, putative, unclassified
LOC_Os11g20520NANA11+11868983..11871953retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20530OsAffx.18961.1.S1_at11/1111+11882167..11883147hypothetical protein
LOC_Os11g20542NANA11+11884647..11885141NA
LOC_Os11g20554Os.53979.1.S1_at11/1111+11886437..11902402Helicase associated domain family protein, expressed
LOC_Os11g20570Os.26886.6.S1_s_at10/1111+11905723..11908817transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g20570Os.26886.2.S1_s_at7/1111+11905723..11908817transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g20570OsAffx.16467.1.S1_at7/1111+11905723..11908817transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g20570OsAffx.3425.1.S1_at1/1111+11905723..11908817transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18961.1.S1_at--328--3991Chr11:11882711..11882735 (25 bp)
CGGGAGGGCATGAGAGCTCCTCGGC
LOC_Os11g20530
OsAffx.18961.1.S1_at--620--4791Chr11:11882696..11882720 (25 bp)
GCTCCTCGGCGAGTGGGACACGCAT
LOC_Os11g20530
OsAffx.18961.1.S1_at--1050--8371Chr11:11882689..11882713 (25 bp)
GGCGAGTGGGACACGCATCCCGCCA
LOC_Os11g20530
OsAffx.18961.1.S1_at--848--9211Chr11:11882633..11882657 (25 bp)
TCCAGCCTGCGCCAGAGGAGGAAGT
LOC_Os11g20530
OsAffx.18961.1.S1_at--913--4791Chr11:11882505..11882529 (25 bp)
GCTCGCCGCTCGTCGTCTTTGTCTT
LOC_Os11g20530
OsAffx.18961.1.S1_at--238--8731Chr11:11882486..11882510 (25 bp)
TGTCTTCGTCTCCAGCCTGTGCCGG
LOC_Os11g20530
OsAffx.18961.1.S1_at--97--10631Chr11:11882309..11882333 (25 bp)
TTCGTCTCTCTAGCGTACGCCGGAG
LOC_Os11g20530
OsAffx.18961.1.S1_at--55--3771Chr11:11882304..11882328 (25 bp)
CTCTCTAGCGTACGCCGGAGAAGGA
LOC_Os11g20530
OsAffx.18961.1.S1_at--978--5951Chr11:11882287..11882311 (25 bp)
GAGAAGGAGGGCACGACAGCGGATG
LOC_Os11g20530
OsAffx.18961.1.S1_at--192--7991Chr11:11882239..11882263 (25 bp)
GGATGACAGAAAAGTGAACGGCGAA
LOC_Os11g20530
OsAffx.18961.1.S1_at--819--2191Chr11:11882197..11882221 (25 bp)
ACAAAATTTCAGTAGCACCAAGTGG
LOC_Os11g20530
Target Sequence 
CGGGAGGGCATGAGAGCTCCTCGGCGAGTGGGACACGCATCCCGCCACTCGCTCACCGTTTGTCGTCTTCGTCTGGGCTC
CAGCCTGCGCCAGAGGAGGAAGTGGGCGCGACGGCGATGAGGAAGGGGCAGGAGGGCATGAGAGCTCCTCGGCAAGGGCA
GCGGCGAGCAGGACGCCCATCCCGCAGCTTGCTGGTCCCACCTCTCGCTCGCCGCTCGTCGTCTTTGTCTTCGTCTCCAG
CCTGTGCCGGAGGAGACAGAGGGAACGATGGCGATGGGGAAGGGGCGGAGCAGGAGGAGAGCTCGTCGGTGAGGGCGGCG
GCAAGCGGGATGCGCATCCCGCCGCTTGCTGGTCCCACCGCTCGCCAGTACGGCCGCTCGCTCGCCACGCATCTTGCTCG
TCTTCGTCTCTCTAGCGTACGCCGGAGAAGGAGGGCACGACAGCGGATGGGGAAGGGATGTGGATCTTACGAGGATGACA
GAAAAGTGAACGGCGAAGAAATGATTATAATTTTACAAAATTTCAGTAGCACCAAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18961.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis