Browse Element(s) Details


OsAffx.18972.1.S1_at

Description tigr:9639.m02043
TID=OsAffx.18972.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2289011/11hypothetical protein
LOC_Os03g176901/11L-ascorbate peroxidase 1, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g22850OsAffx.9177.1.S1_x_at1/1111+12659846..12668356retrotransposon protein, putative, unclassified, expressed
LOC_Os11g22850OsAffx.16111.1.S1_at1/1111+12659846..12668356retrotransposon protein, putative, unclassified, expressed
LOC_Os11g22850OsAffx.16585.1.S1_at1/1111+12659846..12668356retrotransposon protein, putative, unclassified, expressed
LOC_Os11g22850OsAffx.25487.1.S1_at1/1111+12659846..12668356retrotransposon protein, putative, unclassified, expressed
LOC_Os11g22860NANA11+12668870..12669217hypothetical protein
LOC_Os11g22870OsAffx.13030.1.S1_x_at2/1111+12672192..12675323hypothetical protein
LOC_Os11g22870OsAffx.17213.1.S1_x_at1/1111+12672192..12675323hypothetical protein
LOC_Os11g22880Os.54523.1.S1_at1/1111+12680089..12680968hypothetical protein
LOC_Os11g22880OsAffx.12179.1.S1_x_at1/1111+12680089..12680968hypothetical protein
LOC_Os11g22890OsAffx.18972.1.S1_at11/1111+12685028..12685543hypothetical protein
LOC_Os11g22900OsAffx.22946.1.S1_at1/1111+12687819..12689081retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22910NANA11+12689733..12692141retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22920NANA11+12696652..12698438retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g22930OsAffx.9652.1.S1_x_at1/1111+12700588..12705736hypothetical protein
LOC_Os11g22940OsAffx.18923.1.S1_at2/1111+12706526..12711599retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0009408biological_processresponse to heat
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0016688molecular_functionL-ascorbate peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18972.1.S1_at--638--4211Chr11:12685473..12685497 (25 bp)
CCGCACATGTCATCGGCTCGGATGT
LOC_Os11g22890
OsAffx.18972.1.S1_at--807--2111Chr11:12685469..12685493 (25 bp)
ACATGTCATCGGCTCGGATGTGCCG
LOC_Os11g22890
OsAffx.18972.1.S1_at--720--491Chr11:12685462..12685486 (25 bp)
ATCGGCTCGGATGTGCCGGTCCATG
LOC_Os11g22890
OsAffx.18972.1.S1_at--121--3511Chr11:12685441..12685465 (25 bp)
CATGGTGGACTGAGTCGACGGGACA
LOC_Os11g22890
OsAffx.18972.1.S1_at--799--7992Chr11:12685414..12685438 (25 bp)
GGATGGGAGTACCACGCGGCGCTGA
LOC_Os11g22890
OsAffx.18972.1.S1_at--657--4677Chr07:16553360..16553489 (25 bp)
GCGGTGGATGGACGGCCCCGATCTA
NONE
OsAffx.18972.1.S1_at--1142--6391Chr11:12685343..12685367 (25 bp)
GATCTACCCTCACGTAGTTCGGACA
LOC_Os11g22890
OsAffx.18972.1.S1_at--505--1791Chr11:12685338..12685362 (25 bp)
ACCCTCACGTAGTTCGGACAGCAGA
LOC_Os11g22890
OsAffx.18972.1.S1_at--327--9651Chr11:12685334..12685358 (25 bp)
TCACGTAGTTCGGACAGCAGAGGCG
LOC_Os11g22890
OsAffx.18972.1.S1_at--345--8351Chr11:12685313..12685337 (25 bp)
GGCGGCGCGCGGCATGCAGCGGTGC
LOC_Os11g22890
OsAffx.18972.1.S1_at--945--10071Chr11:12685130..12685154 (25 bp)
TAGGCGGTGGCACAGGACACAGAGA
LOC_Os11g22890
Target Sequence 
CCGCACATGTCATCGGCTCGGATGTGCCGGTCCATGGTGGACTGAGTCGACGGGACAGGGGATGGGAGTACCACGCGGCG
CTGACGTGGCACCGACGTGCCGGCCACGCGGGCGGTGGATGGACGGCCCCGATCTACCCTCACGTAGTTCGGACAGCAGA
GGCGGCGCGCGGCATGCAGCGGTGCGGCTCTAGCAGCGGCGGCGCTAGCGGTGGCGCAAGGCGGCAGCTGACGATGGTGA
CCGGCGGCAACGCGACGGCGACGCGGCTAGGCGGCGGCGCTAGGCGGCAGCTGACGATGGTGACCGGCGGCAACGCGACG
GCGACGCGGCTAGGCGGCGGCGCTAGGCGGTGGCACAGGACACAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis