Browse Element(s) Details


OsAffx.18983.1.S1_at

Description tigr:9639.m02133
TID=OsAffx.18983.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2419011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24180OsAffx.31104.1.S1_at11/1111+13270501..13275749sinapoylglucose:choline sinapoyltransferase, putative
LOC_Os11g24190OsAffx.18983.1.S1_at11/1111+13280060..13280506hypothetical protein
LOC_Os11g24200OsAffx.31105.1.S1_at11/1111+13283115..13285119Serine carboxypeptidase family protein, expressed
LOC_Os11g24200Os.25547.1.S1_at9/1111+13283115..13285119Serine carboxypeptidase family protein, expressed
LOC_Os11g24210OsAffx.7184.1.S1_at11/1111+13286298..13287057hypothetical protein
LOC_Os11g24220Os.40360.1.S1_x_at5/1111+13289499..13291952hypothetical protein
LOC_Os11g24220Os.40855.5.S1_x_at1/1111+13289499..13291952hypothetical protein
LOC_Os11g24230OsAffx.31106.1.S1_at10/1111+13295484..13298421hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18983.1.S1_at--1078--2331Chr11:13280269..13280293 (25 bp)
AAAGAACATGATGCGTTTGATTTGT
LOC_Os11g24190
OsAffx.18983.1.S1_at--959--2971Chr11:13280298..13280322 (25 bp)
AATGTGCCACTTCAGCGAGAAAAAG
LOC_Os11g24190
OsAffx.18983.1.S1_at--229--5511Chr11:13280316..13280340 (25 bp)
GAAAAAGGATGGCTACACCCGAACA
LOC_Os11g24190
OsAffx.18983.1.S1_at--1020--5491Chr11:13280336..13280360 (25 bp)
GAACAACCCAAGTCTGTGCTTCAGG
LOC_Os11g24190
OsAffx.18983.1.S1_at--308--2851Chr11:13280345..13280369 (25 bp)
AAGTCTGTGCTTCAGGTTGTAGCTA
LOC_Os11g24190
OsAffx.18983.1.S1_at--58--7311Chr11:13280351..13280375 (25 bp)
GTGCTTCAGGTTGTAGCTAGTGTAC
LOC_Os11g24190
OsAffx.18983.1.S1_at--98--4871Chr11:13280366..13280390 (25 bp)
GCTAGTGTACTTGAGCGCAACCACA
LOC_Os11g24190
OsAffx.18983.1.S1_at--877--3231Chr11:13280389..13280413 (25 bp)
CAAGAAGAGTGTGTTCCTTCGGAAT
LOC_Os11g24190
OsAffx.18983.1.S1_at--937--4311Chr11:13280404..13280428 (25 bp)
CCTTCGGAATGTTGGGATGCACACT
LOC_Os11g24190
OsAffx.18983.1.S1_at--454--6631Chr11:13280414..13280438 (25 bp)
GTTGGGATGCACACTAAGCGATCAA
LOC_Os11g24190
OsAffx.18983.1.S1_at--1063--2671Chr11:13280429..13280453 (25 bp)
AAGCGATCAAGGATGAGTGCAGAAC
LOC_Os11g24190
Target Sequence 
AAAGAACATGATGCGTTTGATTTGTTCAAAATGTGCCACTTCAGCGAGAAAAAGGATGGCTACACCCGAACAACCCAAGT
CTGTGCTTCAGGTTGTAGCTAGTGTACTTGAGCGCAACCACAAGAAGAGTGTGTTCCTTCGGAATGTTGGGATGCACACT
AAGCGATCAAGGATGAGTGCAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis