Browse Element(s) Details


OsAffx.19026.1.S1_at

Description tigr:9639.m02370
TID=OsAffx.19026.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2658011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26530OsAffx.8338.1.S1_x_at1/1111+14702505..14702909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26530OsAffx.10020.1.S1_x_at1/1111+14702505..14702909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26540NANA11+14707920..14713276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26549NANA11+14714655..14715156NA
LOC_Os11g26560OsAffx.7209.1.S1_at11/1111+14719764..14721075hypothetical protein
LOC_Os11g26570OsAffx.31140.1.S1_at11/1111+14723357..14724530Dehydrin family protein, expressed
LOC_Os11g26580OsAffx.19026.1.S1_at11/1111+14726734..14727104hypothetical protein
LOC_Os11g26590NANA11+14729109..14729926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g26600OsAffx.7210.1.S1_at11/1111+14743716..14744404hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19026.1.S1_at--396--3811Chr11:14727015..14727039 (25 bp)
CTCCGCTCTTCCTGCACAAATAAGA
LOC_Os11g26580
OsAffx.19026.1.S1_at--783--3051Chr11:14726900..14727028 (25 bp)
CTGCACAAATAAGAGGTCAAACCAT
LOC_Os11g26580
OsAffx.19026.1.S1_at--1056--2531Chr11:14726881..14726905 (25 bp)
AACCATAAGGAAGATCGGAAGCAAT
LOC_Os11g26580
OsAffx.19026.1.S1_at--547--8191Chr11:14726865..14726889 (25 bp)
GGAAGCAATATTCCGATGGGACTGA
LOC_Os11g26580
OsAffx.19026.1.S1_at--86--9492Chr11:14726855..14726879 (25 bp)
TTCCGATGGGACTGAAAAACGTGGT
LOC_Os11g26580
OsAffx.19026.1.S1_at--669--5531Chr11:14726842..14726866 (25 bp)
GAAAAACGTGGTCAGCCATGCGAGC
LOC_Os11g26580
OsAffx.19026.1.S1_at--13--3391Chr11:14726830..14726854 (25 bp)
CAGCCATGCGAGCTTGAATGTTTGC
LOC_Os11g26580
OsAffx.19026.1.S1_at--702--5911Chr11:14726821..14726845 (25 bp)
GAGCTTGAATGTTTGCTATCAGGAA
LOC_Os11g26580
OsAffx.19026.1.S1_at--1050--3671Chr11:14726806..14726830 (25 bp)
CTATCAGGAAGAGAGGGACTTTGCC
LOC_Os11g26580
OsAffx.19026.1.S1_at--561--7631Chr11:14726792..14726816 (25 bp)
GGGACTTTGCCTATTGCTGTTCAAA
LOC_Os11g26580
OsAffx.19026.1.S1_at--365--8151Chr11:14726767..14726791 (25 bp)
GGACAAGAAGTGCTATTCAACAATT
LOC_Os11g26580
Target Sequence 
CTCCGCTCTTCCTGCACAAATAAGAGGTCAAACCATAAGGAAGATCGGAAGCAATATTCCGATGGGACTGAAAAACGTGG
TCAGCCATGCGAGCTTGAATGTTTGCTATCAGGAAGAGAGGGACTTTGCCTATTGCTGTTCAAAGGACAAGAAGTGCTAT
TCAACAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis