Browse Element(s) Details


OsAffx.31140.1.S1_at

Description tigr:9639.m02369
TID=OsAffx.31140.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DHN6
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2657011/11Dehydrin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26520Os.46715.1.S1_at1/1111+14695883..14700988retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26520Os.46715.1.S1_x_at1/1111+14695883..14700988retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26530OsAffx.8338.1.S1_x_at1/1111+14702505..14702909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26530OsAffx.10020.1.S1_x_at1/1111+14702505..14702909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26540NANA11+14707920..14713276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26549NANA11+14714655..14715156NA
LOC_Os11g26560OsAffx.7209.1.S1_at11/1111+14719764..14721075hypothetical protein
LOC_Os11g26570OsAffx.31140.1.S1_at11/1111+14723357..14724530Dehydrin family protein, expressed
LOC_Os11g26580OsAffx.19026.1.S1_at11/1111+14726734..14727104hypothetical protein
LOC_Os11g26590NANA11+14729109..14729926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g26600OsAffx.7210.1.S1_at11/1111+14743716..14744404hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009414biological_processresponse to water deprivation
GO:0009415biological_processresponse to water
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009961biological_processresponse to 1-aminocyclopropane-1-carboxylic acid
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31140.1.S1_at--90--5511Chr11:14724004..14724028 (25 bp)
GAACAACCGGCGTCACCGGAGCTCA
LOC_Os11g26570
OsAffx.31140.1.S1_at--870--3931Chr11:14723997..14724021 (25 bp)
CGGCGTCACCGGAGCTCAGCACGGA
LOC_Os11g26570
OsAffx.31140.1.S1_at--518--3891Chr11:14723971..14723995 (25 bp)
CTGGTGGACTAGGAACCGGGCACAC
LOC_Os11g26570
OsAffx.31140.1.S1_at--263--9991Chr11:14723962..14723986 (25 bp)
TAGGAACCGGGCACACAGCCGGGTA
LOC_Os11g26570
OsAffx.31140.1.S1_at--4--8651Chr11:14723902..14723926 (25 bp)
TGGGCACCAGGCACATGGCTGGACA
LOC_Os11g26570
OsAffx.31140.1.S1_at--340--8331Chr11:14723886..14723910 (25 bp)
GGCTGGACACGGAGCCACCACAACA
LOC_Os11g26570
OsAffx.31140.1.S1_at--68--2471Chr11:14723865..14723889 (25 bp)
AACACCCGACACCATGGCATACGGA
LOC_Os11g26570
OsAffx.31140.1.S1_at--346--2151Chr11:14723857..14723881 (25 bp)
ACACCATGGCATACGGAACCACCGG
LOC_Os11g26570
OsAffx.31140.1.S1_at--66--271Chr11:14723483..14723507 (25 bp)
ATATGGTGCCGGCACGGGACACACC
LOC_Os11g26570
OsAffx.31140.1.S1_at--733--4671Chr11:14723430..14723454 (25 bp)
GCGGGACGGCGTATACACCGACGAC
LOC_Os11g26570
OsAffx.31140.1.S1_at--464--1671Chr11:14723403..14723427 (25 bp)
AGCCGACGCACGAGAAGAAGGGTAT
LOC_Os11g26570
Target Sequence 
GAACAACCGGCGTCACCGGAGCTCAGCACGGAGCTGGTGGACTAGGAACCGGGCACACAGCCGGGTACGGAACCACCGGA
GCCCACCACGGCGCCGGTGGCTTGGGCACCAGGCACATGGCTGGACACGGAGCCACCACAACACCCGACACCATGGCATA
CGGAACCACCGGCACAGGGGCGCCACACGGCGCCACCGCCGGCACCGGCGCGTATCCGCACGCAGGCGGCCAGTTCCAGC
CGGCGAGAGAGGAGCACAAGACCGGTGGCATCCTCCGCCGCTCCGGCAGTTCAAGCTCAAGCTCGTCGTCTGAGGACGAC
GGGATGGGAGGGAGGAGGAAGAAGGGAATCAAGGAGAAGATCAAGGAGAAGCTCCCCGGCGGCAACAAGGGCGGCCAGCA
GCAGCCGACGGCCACTGCGGCGACCGGCGGATATGGTGCCGGCACGGGACACACCGCCGCCGCTGGTACAACCACCGACG
CCGGCGGGACGGCGTATACACCGACGACGCAGCCGACGCACGAGAAGAAGGGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis