Browse Element(s) Details


OsAffx.7209.1.S1_at

Description tigr:9639.m02368
TID=OsAffx.7209.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2656011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26520Os.46715.1.S1_at1/1111+14695883..14700988retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26520Os.46715.1.S1_x_at1/1111+14695883..14700988retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26530OsAffx.8338.1.S1_x_at1/1111+14702505..14702909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26530OsAffx.10020.1.S1_x_at1/1111+14702505..14702909retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26540NANA11+14707920..14713276retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26549NANA11+14714655..14715156NA
LOC_Os11g26560OsAffx.7209.1.S1_at11/1111+14719764..14721075hypothetical protein
LOC_Os11g26570OsAffx.31140.1.S1_at11/1111+14723357..14724530Dehydrin family protein, expressed
LOC_Os11g26580OsAffx.19026.1.S1_at11/1111+14726734..14727104hypothetical protein
LOC_Os11g26590NANA11+14729109..14729926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g26600OsAffx.7210.1.S1_at11/1111+14743716..14744404hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7209.1.S1_at--832--10233Chr11:14719836..14719860 (25 bp)
TTTGGCCCAATTGTCCATTCATTGA
LOC_Os11g26560
OsAffx.7209.1.S1_at--797--9411Chr11:14719879..14719903 (25 bp)
TCGTCCAATTGATCGATCACCTGTT
LOC_Os11g26560
OsAffx.7209.1.S1_at--93--392Chr11:14719894..14719918 (25 bp)
ATCACCTGTTTTGATGTCGTTTCTC
LOC_Os11g26560
OsAffx.7209.1.S1_at--346--7211Chr11:14719909..14719933 (25 bp)
GTCGTTTCTCCTTCATTTTATGTAC
LOC_Os11g26560
OsAffx.7209.1.S1_at--1139--8551Chr11:14720880..14720904 (25 bp)
TGGATGTTTATATCGGCTCGGCTCA
LOC_Os11g26560
OsAffx.7209.1.S1_at--633--8311Chr11:14720894..14720918 (25 bp)
GGCTCGGCTCAAATCGTATACGTCA
LOC_Os11g26560
OsAffx.7209.1.S1_at--1135--311Chr11:14720911..14720935 (25 bp)
ATACGTCAATTGCTGGCACCTTTGA
LOC_Os11g26560
OsAffx.7209.1.S1_at--964--10751Chr11:14720932..14720956 (25 bp)
TTGAGTGTTCTTACTAGTGCCGTCT
LOC_Os11g26560
OsAffx.7209.1.S1_at--920--1131Chr11:14720947..14720971 (25 bp)
AGTGCCGTCTTCGTGGTGCCAGTTG
LOC_Os11g26560
OsAffx.7209.1.S1_at--1029--4211Chr11:14720978..14721002 (25 bp)
CCGACATCTTTGTGGTATTCCTAAC
LOC_Os11g26560
OsAffx.7209.1.S1_at--738--10671Chr11:14720995..14721019 (25 bp)
TTCCTAACAAGCACCAGTAACCCTA
LOC_Os11g26560
Target Sequence 
TTTGGCCCAATTGTCCATTCATTGATAAGTTTGATTCTCGACATCGTCCAATTGATCGATCACCTGTTTTGATGTCGTTT
CTCCTTCATTTTATGTACATTCTCTGCAAAAGGTTCGCAGCAGGCGGTGACGGGAGGAGAGGCGGCAGCGGCGGGCGGCC
CTCTGCTAGATCCGGTGGGAGGGGAGGCAGTGGCAGCGGCGGCGGCCCACGGGCGACGTCGGCGGGCTCACGTCTTCCAG
ATCCAGCAACCTCTCCGACCGCCTCTCCTCCTATCGCCTACCTCCTCCTTCATCCGATTTTTGGATGTTTATATCGGCTC
GGCTCAAATCGTATACGTCAATTGCTGGCACCTTTGAGTGTTCTTACTAGTGCCGTCTTCGTGGTGCCAGTTGGGAAAAC
CGACATCTTTGTGGTATTCCTAACAAGCACCAGTAACCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7209.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis