Browse Element(s) Details


OsAffx.19034.1.S1_at

Description tigr:9639.m02419
TID=OsAffx.19034.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2703011/11MATH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g27000OsAffx.7213.1.S1_at11/1111+15052590..15053912hypothetical protein
LOC_Os11g27010OsAffx.31154.1.S1_at11/1111+15056926..15057252hypothetical protein
LOC_Os11g27020OsAffx.7214.1.S1_at11/1111+15060603..15062746hypothetical protein
LOC_Os11g27030OsAffx.19034.1.S1_at11/1111+15064273..15064782MATH domain containing protein
LOC_Os11g27040NANA11+15069137..15070363hypothetical protein
LOC_Os11g27050OsAffx.20329.1.S1_at5/1111+15070712..15075628retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27060NANA11+15081191..15083908retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27070NANA11+15084545..15085688transposon protein, putative, unclassified
LOC_Os11g27080NANA11+15086186..15086955retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g27090OsAffx.19035.1.S1_at11/1111+15087873..15090846hypothetical protein
LOC_Os11g27090OsAffx.19035.1.S1_x_at11/1111+15087873..15090846hypothetical protein
LOC_Os11g27090OsAffx.13772.1.S1_at2/1111+15087873..15090846hypothetical protein
LOC_Os11g27090OsAffx.13772.1.S1_x_at1/1111+15087873..15090846hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19034.1.S1_at--1032--3751Chr11:15064333..15064357 (25 bp)
CTCTGCTACCCAAACGGGAGGACGT
LOC_Os11g27030
OsAffx.19034.1.S1_at--148--1911Chr11:15064354..15064378 (25 bp)
ACGTGTCCGGGTTTCGTCTCTGTCT
LOC_Os11g27030
OsAffx.19034.1.S1_at--912--5871Chr11:15064471..15064495 (25 bp)
GAGCCGCACGAGAAGAGGTTCACGA
LOC_Os11g27030
OsAffx.19034.1.S1_at--486--7891Chr11:15064487..15064511 (25 bp)
GGTTCACGAGGGTATTCTACTCCGG
LOC_Os11g27030
OsAffx.19034.1.S1_at--771--5891Chr11:15064549..15064573 (25 bp)
GAGCTGGAGAAGTCGTGGTACCTCA
LOC_Os11g27030
OsAffx.19034.1.S1_at--252--9971Chr11:15064567..15064591 (25 bp)
TACCTCAAGGATGACGGGTTCGCGA
LOC_Os11g27030
OsAffx.19034.1.S1_at--1097--531Chr11:15064603..15064627 (25 bp)
ATCGCCGTCGTCAATAAGTTGGTCG
LOC_Os11g27030
OsAffx.19034.1.S1_at--245--331Chr11:15064616..15064640 (25 bp)
ATAAGTTGGTCGTGAAGGAGCCCGT
LOC_Os11g27030
OsAffx.19034.1.S1_at--1141--9011Chr11:15064684..15064708 (25 bp)
TGCAACGACGATATGTGCACGCTCC
LOC_Os11g27030
OsAffx.19034.1.S1_at--460--3491Chr11:15064711..15064735 (25 bp)
CATACCTTGAGCTTCGCCCAAGTTG
LOC_Os11g27030
OsAffx.19034.1.S1_at--540--4551Chr11:15064726..15064750 (25 bp)
GCCCAAGTTGCCAAGCTCAAGTTTT
LOC_Os11g27030
Target Sequence 
CTCTGCTACCCAAACGGGAGGACGTGTCCGGGTTTCGTCTCTGTCTCCCTCACGCTCCACCACATCACCCAGGCCCAGGC
CGAGGTCCGGTTTAGCCTGGTCCCTCAACACCACTACGGGCTGACGCTGCCGTTGGGCGAGCCGCACGAGAAGAGGTTCA
CGAGGGTATTCTACTCCGGGGTCACGGAGGGGTTCGACAGGTTCGTCGTTAGGAAGGAGCTGGAGAAGTCGTGGTACCTC
AAGGATGACGGGTTCGCGATCCGGTGCGACATCGCCGTCGTCAATAAGTTGGTCGTGAAGGAGCCCGTGGTTCGGCCGGC
CGACCTGGAGAGGCTGGGGATGGTTTGCAACTGCAACGACGATATGTGCACGCTCCACCATACCTTGAGCTTCGCCCAAG
TTGCCAAGCTCAAGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis