Browse Element(s) Details


OsAffx.19055.1.S1_at

Description tigr:9639.m02570
TID=OsAffx.19055.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2847011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28420Os.52253.1.S1_at11/1111+15864770..15865563expressed protein
LOC_Os11g28420OsAffx.8000.1.S1_x_at1/1111+15864770..15865563expressed protein
LOC_Os11g28430OsAffx.31183.1.S1_at10/1111+15867195..15869881hypothetical protein
LOC_Os11g28430OsAffx.18697.2.A1_at7/1111+15867195..15869881hypothetical protein
LOC_Os11g28440OsAffx.19052.1.S1_at10/1111+15873308..15874748hypothetical protein
LOC_Os11g28450OsAffx.19053.1.S1_at11/1111+15876188..15876945hypothetical protein
LOC_Os11g28460OsAffx.8934.1.S1_x_at1/1111+15877993..15878668hypothetical protein
LOC_Os11g28470OsAffx.19055.1.S1_at11/1111+15883922..15885418hypothetical protein
LOC_Os11g28480OsAffx.31184.1.S1_at10/1111+15886678..15893723expressed protein
LOC_Os11g28480Os.3448.1.S1_a_at1/1111+15886678..15893723expressed protein
LOC_Os11g28490OsAffx.31186.1.S1_at11/1111+15906020..15907595Ent-kaurene synthase B, chloroplast precursor, putative
LOC_Os11g28500OsAffx.7236.1.S1_at11/1111+15908651..15910852Terpene synthase, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19055.1.S1_at--1133--4671Chr11:15884420..15884444 (25 bp)
GCGGATCGATCCATTACTCCAAGAG
LOC_Os11g28470
OsAffx.19055.1.S1_at--410--3691Chr11:15884366..15884390 (25 bp)
CTTTGGTTCAGGTTCTAGCATTCTA
LOC_Os11g28470
OsAffx.19055.1.S1_at--930--6311Chr11:15884236..15884260 (25 bp)
GATGAACAGTTTTCGCACACTATGC
LOC_Os11g28470
OsAffx.19055.1.S1_at--337--5611Chr11:15884173..15884197 (25 bp)
GACAAGTATTTCACCAAGCTCAGCA
LOC_Os11g28470
OsAffx.19055.1.S1_at--854--4971Chr11:15884151..15884175 (25 bp)
GCATCGCTCGTGTGGCTCTGAAGGT
LOC_Os11g28470
OsAffx.19055.1.S1_at--941--8991Chr11:15884133..15884157 (25 bp)
TGAAGGTGCTTCCAATGCCTCTTAG
LOC_Os11g28470
OsAffx.19055.1.S1_at--938--2331Chr11:15884105..15884129 (25 bp)
AAAGAGTGCTTCTCAGACCGGCGAG
LOC_Os11g28470
OsAffx.19055.1.S1_at--738--1291Chr11:15884073..15884097 (25 bp)
AGATGCCTGGCACTATGGTTCAAGA
LOC_Os11g28470
OsAffx.19055.1.S1_at--506--10511Chr11:15884055..15884079 (25 bp)
TTCAAGAACTAGTTGCCGGCAGCGT
LOC_Os11g28470
OsAffx.19055.1.S1_at--158--3951Chr11:15884039..15884063 (25 bp)
CGGCAGCGTTCTTCCTGTAGAGAAA
LOC_Os11g28470
OsAffx.19055.1.S1_at--243--9971Chr11:15883972..15883996 (25 bp)
TACCGCTACACCGTTGTTTGTGAGA
LOC_Os11g28470
Target Sequence 
GCGGATCGATCCATTACTCCAAGAGGAATACTGGTACTTCTTCAGGTCACTTGCCTTTGGTTCAGGTTCTAGCATTCTAG
AGGAGCATGCAGGGCTCGCTGTGGTTGGCAGACAAATTGCAGCAGAACTTCATGGCTCATTGTTTGGAGCCAAGGTACTC
GGTAGGTTTCTAAGGGCAAACCTTGATGAACAGTTTTCGCACACTATGCTTAACACCGTGTACAGATTCCATGAAGTGAT
GCAACGTGACAAGTATTTCACCAAGCTCAGCATCGCTCGTGTGGCTCTGAAGGTGCTTCCAATGCCTCTTAGGCTAAAGA
GTGCTTCTCAGACCGGCGAGGCTTCAGAGATGCCTGGCACTATGGTTCAAGAACTAGTTGCCGGCAGCGTTCTTCCTGTA
GAGAAAGAGATGGAGGTTGTGCTGTGGGAGTCTGCCTACCAGCCGAGTTACCGCTACACCGTTGTTTGTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis