Browse Element(s) Details


OsAffx.19072.1.S1_at

Description tigr:9639.m02690
TID=OsAffx.19072.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2976011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29730OsAffx.17542.1.S1_at2/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29730Os.6901.1.S1_at1/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29730OsAffx.6081.1.S1_at1/1111+16742444..16746313retrotransposon protein, putative, unclassified
LOC_Os11g29740OsAffx.7250.1.S1_at11/1111+16749342..16749860expressed protein
LOC_Os11g29750Os.52639.1.S1_at4/1111+16757199..16762215E1-E2 ATPase family protein
LOC_Os11g29760OsAffx.19072.1.S1_at11/1111+16766068..16766564hypothetical protein
LOC_Os11g29770OsAffx.31207.1.S1_at11/1111+16770605..16771999Zinc knuckle family protein
LOC_Os11g29780Os.18376.1.S1_at11/1111+16781300..16782677uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os11g29790OsAffx.31208.1.S1_at11/1111+16788372..16791560Leucine Rich Repeat family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19072.1.S1_at--711--9131Chr11:16766111..16766135 (25 bp)
TGCGAGGGCAACGACTACAGTGGCT
LOC_Os11g29760
OsAffx.19072.1.S1_at--989--2012Chr11:16766124..16766148 (25 bp)
ACTACAGTGGCTGCGTCGAGCTGCG
LOC_Os11g29760
OsAffx.19072.1.S1_at--1015--5011Chr11:16766234..16766258 (25 bp)
GCAGGGAGATGTCCTTATCACTCTC
LOC_Os11g29760
OsAffx.19072.1.S1_at--142--6913Chr11:16766300..16766324 (25 bp)
GTATGCACAAATTCAGGTCTCAGAT
LOC_Os11g29760
OsAffx.19072.1.S1_at--662--1251Chr11:16766379..16766403 (25 bp)
AGATTGTACACCAAGACCACTGCTC
LOC_Os11g29760
OsAffx.19072.1.S1_at--56--6675Chr11:16766407..16766431 (25 bp)
GTTGCTTCCACCACGCGTCGAGCTG
LOC_Os11g29760
OsAffx.19072.1.S1_at--930--9052Chr11:16766430..16766454 (25 bp)
TGCTTCTTCCTTGCTAAGCCAAATC
LOC_Os11g29760
OsAffx.19072.1.S1_at--629--2652Chr11:16766445..16766469 (25 bp)
AAGCCAAATCCAAAGGCGCGTGCGG
LOC_Os11g29760
OsAffx.19072.1.S1_at--706--4651Chr11:16766462..16766486 (25 bp)
GCGTGCGGCGACAATGCTCGGACCT
LOC_Os11g29760
OsAffx.19072.1.S1_at--889--3011Chr11:16766474..16766498 (25 bp)
AATGCTCGGACCTTCCGCTGACGAC
LOC_Os11g29760
OsAffx.19072.1.S1_at--482--5652Chr11:16766496..16766520 (25 bp)
GACTACGCGCAGAGGCTTCCACCGG
LOC_Os11g29760
Target Sequence 
TGCGAGGGCAACGACTACAGTGGCTGCGTCGAGCTGCGAGTGTCGCGGCTGCTGCGTCGAGCTGCCAGGGCCGCGGCGGC
TGCGGCGTCGGCATCGGCGTGGAGCTGCGAGGCGGCGGCGGTGGCAGGGAGATGTCCTTATCACTCTCCTCTTACCGATG
TCAAGCAAAAAGAGAAGAGCAAAATATTAGTATGCACAAATTCAGGTCTCAGATTCAGATGATACTTCCCAGATTGTACA
CCAAGACCACTGCTCGTCGTTGCTTCCACCACGCGTCGAGCTGCTTCTTCCTTGCTAAGCCAAATCCAAAGGCGCGTGCG
GCGACAATGCTCGGACCTTCCGCTGACGACTACGCGCAGAGGCTTCCACCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis