Browse Element(s) Details


OsAffx.19077.1.S1_at

Description tigr:9639.m02711
TID=OsAffx.19077.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2998011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g29940OsAffx.19076.1.S1_at10/1111+16897034..16899228hypothetical protein
LOC_Os11g29940Os.51841.1.S1_x_at1/1111+16897034..16899228hypothetical protein
LOC_Os11g29950OsAffx.8923.1.S1_at9/1111+16902731..16904701retrotransposon protein, putative, unclassified
LOC_Os11g29960Os.51887.1.S1_x_at1/1111+16905146..16908244retrotransposon protein, putative, unclassified
LOC_Os11g29970OsAffx.31214.1.S1_at11/1111+16909269..16914755NB-ARC domain containing protein, expressed
LOC_Os11g29980OsAffx.19077.1.S1_at11/1111+16922819..16926281NB-ARC domain containing protein
LOC_Os11g29990OsAffx.31215.1.S1_at11/1111+16931533..16935561NB-ARC domain containing protein
LOC_Os11g30000Os.46012.2.S1_x_at7/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.27088.1.A1_x_at4/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.46012.3.S1_x_at3/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.19145.1.S1_x_at2/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.30217.1.S1_x_at2/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000Os.54691.1.S1_x_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.10222.1.S1_x_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30000OsAffx.19145.1.S1_at1/1111+16937467..16946610retrotransposon protein, putative, unclassified
LOC_Os11g30010NANA11+16950641..16952484NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19077.1.S1_at--884--10511Chr11:16923666..16923690 (25 bp)
TTGCTACTTGAGAGTCTACGGCCTC
LOC_Os11g29980
OsAffx.19077.1.S1_at--496--8431Chr11:16923647..16923671 (25 bp)
GGCCTCATCATCGAAGCCTTAGAGA
LOC_Os11g29980
OsAffx.19077.1.S1_at--656--7591Chr11:16923577..16923601 (25 bp)
GGGCAGTACATCATTTTCCAAGCTA
LOC_Os11g29980
OsAffx.19077.1.S1_at--1--9951Chr11:16923551..16923575 (25 bp)
TACGATTAGTGCTACGCCTATGTCG
LOC_Os11g29980
OsAffx.19077.1.S1_at--347--771Chr11:16923158..16923556 (25 bp)
ATGTCGCTCGTCACTGAAGCTTCTG
LOC_Os11g29980
OsAffx.19077.1.S1_at--124--4911Chr11:16923140..16923164 (25 bp)
GCTTCTGAATTGTCCAAGTCTGGCT
LOC_Os11g29980
OsAffx.19077.1.S1_at--320--7191Chr11:16923123..16923147 (25 bp)
GTCTGGCTACAGTTAGTCAGTTCCC
LOC_Os11g29980
OsAffx.19077.1.S1_at--107--7151Chr11:16923088..16923112 (25 bp)
GTCTTGCATGTCTGTGATCCATTCA
LOC_Os11g29980
OsAffx.19077.1.S1_at--1084--1331Chr11:16922919..16922943 (25 bp)
AGAGTTGCAATGCTTTTGCCGGCCT
LOC_Os11g29980
OsAffx.19077.1.S1_at--842--2031Chr11:16922879..16922903 (25 bp)
ACTATGGATACGCTGTTCTCCACGA
LOC_Os11g29980
OsAffx.19077.1.S1_at--537--10511Chr11:16922853..16922877 (25 bp)
TTCACATACCTGATTCACTCCGAAG
LOC_Os11g29980
Target Sequence 
TTGCTACTTGAGAGTCTACGGCCTCATCATCGAAGCCTTAGAGAATTGACACTACAAAACTTTAACTGCAAGATATATCC
CAGTTGGTTGGGCAGTACATCATTTTCCAAGCTAATACGATTAGTGCTACGCCTATGTCGCTCGTCACTGAAGCTTCTGA
ATTGTCCAAGTCTGGCTACAGTTAGTCAGTTCCCCTCACTCACTGTCTTGCATGTCTGTGATCCATTCAAAGAAGAGATA
CTCCAGAGGTTGGTGAATTCACACATGATGCTGGAAGAATTACATATTGAGTCTGATACAATAAATTCCATCTGTCTTGA
CCCTCTCAAACTACCTTCACTCAAAAATCTCGATGTAAGATGCCCTAGTTTGAAGAGTTGCAATGCTTTTGCCGGCCTCA
CTTCCCTGAAGATACTATGGATACGCTGTTCTCCACGACTTCACATACCTGATTCACTCCGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis