Browse Element(s) Details


OsAffx.19096.1.S1_at

Description tigr:9639.m02818
TID=OsAffx.19096.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g310805/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31050NANA11+17560923..17565421retrotransposon protein, putative, unclassified
LOC_Os11g31060OsAffx.19095.1.S1_at11/1111+17567492..17569027BAG domain containing protein, expressed
LOC_Os11g31070OsAffx.31236.1.S1_at11/1111+17573475..17574219hypothetical protein
LOC_Os11g31080OsAffx.19096.1.S1_at5/1111+17586311..17587241hypothetical protein
LOC_Os11g31090OsAffx.31237.1.S1_at11/1111+17590335..17592644transferase family protein, putative, expressed
LOC_Os11g31100OsAffx.19098.1.S1_at11/1111+17594109..17600157GRAS family transcription factor containing protein
LOC_Os11g31100OsAffx.19097.1.S1_at9/1111+17594109..17600157GRAS family transcription factor containing protein
LOC_Os11g31110Os.50230.1.S1_at10/1111+17604256..17610469expressed protein
LOC_Os11g31120OsAffx.7263.1.S1_at9/1111+17611808..17612866hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19096.1.S1_at--236--5751Chr11:17587146..17587170 (25 bp)
GACGAGGTTTCTGGTGACGGTTGGA
LOC_Os11g31080
OsAffx.19096.1.S1_at--10--6171NONE
GAGGAGTTCCTCAATACGGCTCCCT
NONE
OsAffx.19096.1.S1_at--898--2731NONE
AATACGGCTCCCTCAGGCACGAATC
NONE
OsAffx.19096.1.S1_at--637--891NONE
AGGCACGAATCAGCCGGTACCCGAG
NONE
OsAffx.19096.1.S1_at--1070--5231NONE
GAATCAGCCGGTACCCGAGACATAT
NONE
OsAffx.19096.1.S1_at--55--1651NONE
AGCCGGTACCCGAGACATATTTGAA
NONE
OsAffx.19096.1.S1_at--646--7811NONE
GGTACCCGAGACATATTTGAAGCGG
NONE
OsAffx.19096.1.S1_at--126--3792Chr07:14782420..14782473 (23 bp)
CTCGGCGTCGGTTTGCGCGGAGAAG
NONE
OsAffx.19096.1.S1_at--579--2891Chr11:17586484..17586508 (25 bp)
AAGGTGGGCGATGACCATGTCCCCC
LOC_Os11g31080
OsAffx.19096.1.S1_at--1031--3491Chr11:17586469..17586493 (25 bp)
CATGTCCCCCGCATGTGTGGGCGAG
LOC_Os11g31080
OsAffx.19096.1.S1_at--389--5191Chr11:17586410..17586434 (25 bp)
GCAATGTGCGCGGAGTGGCCATGGC
LOC_Os11g31080
Target Sequence 
GACGAGGTTTCTGGTGACGGTTGGAGACGAAGAAGGGGCGGCCGAGGAGTTCCTCAATACGGCTCCCTCAGGCACGAATC
AGCCGGTACCCGAGACATATTTGAAGCGGGAGGGGAAGGCGGCGACATCATCTCGGGCGGCTCGGCTCGGCGTCGGTTTG
CGCGGAGAAGTGGGGAAGGTGGGCGATGACCATGTCCCCCGCATGTGTGGGCGAGGCGGGAAGGCGCGAGGACGATGGCG
TCATGGGGAGCAATGTGCGCGGAGTGGCCATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19096.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis