Browse Element(s) Details


OsAffx.19148.1.S1_x_at

Description tigr:9639.m03056
TID=OsAffx.19148.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3402011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33970OsAffx.7288.1.S1_at11/1111+19357334..19358206expressed protein
LOC_Os11g33980OsAffx.31287.1.S1_at11/1111+19358315..19362454hypothetical protein
LOC_Os11g33980OsAffx.20497.1.S1_at1/1111+19358315..19362454hypothetical protein
LOC_Os11g33990OsAffx.7289.1.S1_at11/1111+19368786..19369638expressed protein
LOC_Os11g34000OsAffx.30422.2.S1_x_at11/1111+19370862..19371146hypothetical protein
LOC_Os11g34000OsAffx.30422.1.S1_x_at1/1111+19370862..19371146hypothetical protein
LOC_Os11g34010OsAffx.19147.1.S1_at11/1111+19372416..19372758hypothetical protein
LOC_Os11g34020OsAffx.19148.1.S1_x_at11/1111+19374030..19374944expressed protein
LOC_Os11g34030OsAffx.7291.1.S1_at11/1111+19387263..19388599hypothetical protein
LOC_Os11g34040OsAffx.31288.1.S1_at11/1111+19392318..19392814hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19148.1.S1_x_at--244--7291Chr11:19374593..19374617 (25 bp)
GTGCGGGCGGAGTGCGAACGGCTGC
LOC_Os11g34020
OsAffx.19148.1.S1_x_at--455--1531Chr11:19374556..19374580 (25 bp)
AGCAGGCGCGGAAGCGACAGTGCCA
LOC_Os11g34020
OsAffx.19148.1.S1_x_at--1110--8172Chr11:19374547..19374571 (25 bp)
GGAAGCGACAGTGCCAGGCGCTGGT
LOC_Os11g34020
OsAffx.19148.1.S1_x_at--256--9051Chr11:19374490..19374514 (25 bp)
TGCAGGAGACGGAGTCCCAGCTCGC
LOC_Os11g34020
OsAffx.19148.1.S1_x_at--43--5991Chr11:19374485..19374509 (25 bp)
GAGACGGAGTCCCAGCTCGCGGCGG
LOC_Os11g34020
OsAffx.19148.1.S1_x_at--1116--7491Chr11:19374399..19374423 (25 bp)
GTGGTGCGGCCTGGCGCGCAGCAAC
LOC_Os11g34020
OsAffx.19148.1.S1_x_at--611--1151Chr11:19374244..19374268 (25 bp)
AGTCGTGCTGCTTCGAGACGACGGC
LOC_Os11g34020
OsAffx.19148.1.S1_x_at--484--1851Chr11:19374218..19374242 (25 bp)
ACGAAGACGAACACGCGCCGTGGCG
LOC_Os11g34020
OsAffx.19148.1.S1_x_at--250--9191Chr11:19374116..19374140 (25 bp)
TGCCGGCACCTGTGCCTGTGCAGGG
LOC_Os11g34020
OsAffx.19148.1.S1_x_at--404--1771Chr11:19374109..19374133 (25 bp)
ACCTGTGCCTGTGCAGGGCGTGCGA
LOC_Os11g34020
OsAffx.19148.1.S1_x_at--264--7471Chr11:19374062..19374086 (25 bp)
GTGTGCCTCGCCGTCAAGAAGGTCT
LOC_Os11g34020
Target Sequence 
GTGCGGGCGGAGTGCGAACGGCTGCGCGCCGGGGTGGAGCAGGCGCGGAAGCGACAGTGCCAGGCGCTGGTGCGCGCCGC
GGCGGCGGCGGCGTCGCGCCGCCTGCAGGAGACGGAGTCCCAGCTCGCGGCGGCGCGCCGCCGCGCCGCCGACCTGGAGG
AGCGGCTCCGCCAGGCGGCCGCCGAGAGCCAGGCGTGGTGCGGCCTGGCGCGCAGCAACGAGGCCGTCGCCGCGGGGCTC
CGCGCCACGCTCGACCACCTCCTCCTCCGCGCCGCCGCGGCGCCGCCGTGCGCCCCCGTCGAGGGCTGCGGCGAGTCCGA
CGGCCCGAACACCGCCGACGACGACGCGCAGTCGTGCTGCTTCGAGACGACGGCGACGAAGACGAACACGCGCCGTGGCG
GCGGCGTCGGCGTCGGCGGAGGGAGGTGGGGGTGCAAGGCGTGCGGCGAGAGGGAGGCAGCGGTGCTGCTGCTGCCGTGC
CGGCACCTGTGCCTGTGCAGGGCGTGCGAGGCGAGGGCGGAGGCGTGCCCGGTGTGCCTCGCCGTCAAGAAGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19148.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis