Browse Element(s) Details


OsAffx.19260.1.S1_at

Description tigr:9639.m03629
TID=OsAffx.19260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3976011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39740OsAffx.31393.1.S1_at11/1111+23182070..23183273hypothetical protein
LOC_Os11g39750NANA11+23200564..23201127hypothetical protein
LOC_Os11g39760OsAffx.19260.1.S1_at11/1111+23202457..23202879hypothetical protein
LOC_Os11g39770OsAffx.31396.1.S1_at11/1111+23203960..23204597hypothetical protein
LOC_Os11g39780OsAffx.19261.1.S1_at11/1111+23206355..23206933expressed protein
LOC_Os11g39790OsAffx.22848.3.S1_x_at1/1111+23212631..23218755retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39800OsAffx.31394.1.S1_at10/1111+23223871..23224786hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19260.1.S1_at--488--3231Chr11:23202567..23202591 (25 bp)
CAAGATCCTGGCCATCAAGAGGAGG
LOC_Os11g39760
OsAffx.19260.1.S1_at--1064--9271Chr11:23202572..23202596 (25 bp)
TCCTGGCCATCAAGAGGAGGCCCTT
LOC_Os11g39760
OsAffx.19260.1.S1_at--342--1511Chr11:23202656..23202680 (25 bp)
AGCACGAGGCCTTGCAGGACAAGTT
LOC_Os11g39760
OsAffx.19260.1.S1_at--24--9211Chr11:23202688..23202712 (25 bp)
TGCCAGGCCATGATCCGGGAGCATC
LOC_Os11g39760
OsAffx.19260.1.S1_at--331--711Chr11:23202697..23202721 (25 bp)
ATGATCCGGGAGCATCGCCACGAGA
LOC_Os11g39760
OsAffx.19260.1.S1_at--974--551Chr11:23202700..23202724 (25 bp)
ATCCGGGAGCATCGCCACGAGAACA
LOC_Os11g39760
OsAffx.19260.1.S1_at--381--5931Chr11:23202706..23202730 (25 bp)
GAGCATCGCCACGAGAACAAGGGCT
LOC_Os11g39760
OsAffx.19260.1.S1_at--712--4351Chr11:23202714..23202738 (25 bp)
CCACGAGAACAAGGGCTACGCCATT
LOC_Os11g39760
OsAffx.19260.1.S1_at--292--5511Chr11:23202720..23202744 (25 bp)
GAACAAGGGCTACGCCATTGTCGAC
LOC_Os11g39760
OsAffx.19260.1.S1_at--996--9591Chr11:23202758..23202782 (25 bp)
TCAGGATGGCCGTGACCAGGGCCCT
LOC_Os11g39760
OsAffx.19260.1.S1_at--422--10611Chr11:23202790..23202814 (25 bp)
TTCGTTGAGCGCTACCACTGGGTCG
LOC_Os11g39760
Target Sequence 
CAAGATCCTGGCCATCAAGAGGAGGCCCTTCTCCTTCGGCGACGACGACATCGGCTCGGACGACGACGAGCTCAGGGAGC
TGGCCGTGCAGCACGAGGCCTTGCAGGACAAGTTCGCCGCGTGCCAGGCCATGATCCGGGAGCATCGCCACGAGAACAAG
GGCTACGCCATTGTCGACGACGAGTTGCAGGTCAGGATGGCCGTGACCAGGGCCCTGCACCCCTTCGTTGAGCGCTACCA
CTGGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis