Browse Element(s) Details


OsAffx.19262.1.S1_at

Description tigr:9639.m03637
TID=OsAffx.19262.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3984011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39800OsAffx.31394.1.S1_at10/1111+23223871..23224786hypothetical protein
LOC_Os11g39810OsAffx.7361.1.S1_at11/1111+23230037..23233495hypothetical protein
LOC_Os11g39820NANA11+23243054..23244635hypothetical protein
LOC_Os11g39830OsAffx.31396.2.S1_at11/1111+23246837..23247379hypothetical protein
LOC_Os11g39840OsAffx.19262.1.S1_at11/1111+23249193..23249684hypothetical protein
LOC_Os11g39850OsAffx.31397.1.S1_at11/1111+23252534..23254948expressed protein
LOC_Os11g39860NANA11+23258744..23259502retrotransposon protein, putative, unclassified
LOC_Os11g39870Os.46314.2.S1_x_at2/1111+23262725..23268858retrotransposon protein, putative, unclassified
LOC_Os11g39880NANA11+23271211..23273188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g39890NANA11+23274522..23275732retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19262.1.S1_at--1112--591Chr11:23249229..23249253 (25 bp)
ATGCCGCAGGAGCACATCAGCTGGA
LOC_Os11g39840
OsAffx.19262.1.S1_at--1017--391Chr11:23249244..23249268 (25 bp)
ATCAGCTGGATCCTTCACCGGAGGG
LOC_Os11g39840
OsAffx.19262.1.S1_at--199--10491Chr11:23249257..23249281 (25 bp)
TTCACCGGAGGGAGCCGTCGTTCGA
LOC_Os11g39840
OsAffx.19262.1.S1_at--1093--4571Chr11:23249303..23249327 (25 bp)
GCGCAGGGAGCTCTACACCGACGAC
LOC_Os11g39840
OsAffx.19262.1.S1_at--966--1851Chr11:23249476..23249500 (25 bp)
ACGACGGCTACTTCGATCGGCAGGA
LOC_Os11g39840
OsAffx.19262.1.S1_at--695--471Chr11:23249491..23249515 (25 bp)
ATCGGCAGGAGGAGAACCGAGCTCT
LOC_Os11g39840
OsAffx.19262.1.S1_at--384--2611Chr11:23249505..23249529 (25 bp)
AACCGAGCTCTCGTCTGGGAGAATT
LOC_Os11g39840
OsAffx.19262.1.S1_at--711--6011Chr11:23249534..23249558 (25 bp)
GAGAGAGTTCGCTCAGATGCTCCGG
LOC_Os11g39840
OsAffx.19262.1.S1_at--31--1231Chr11:23249539..23249563 (25 bp)
AGTTCGCTCAGATGCTCCGGGAGAA
LOC_Os11g39840
OsAffx.19262.1.S1_at--99--8871Chr11:23249591..23249615 (25 bp)
TGATGAAGCTGTTTCTGATGACGAA
LOC_Os11g39840
OsAffx.19262.1.S1_at--549--6311Chr11:23249607..23249631 (25 bp)
GATGACGAACACCAACACGAAGATG
LOC_Os11g39840
Target Sequence 
ATGCCGCAGGAGCACATCAGCTGGATCCTTCACCGGAGGGAGCCGTCGTTCGACGAGGCCGACAAGGCCGCGGCGCGCAG
GGAGCTCTACACCGACGACCACGAGCTGGTGCGGAGCGGGTGGTTCGACGACCTGCTGGCGCTGCAGCGGGGGTTCGTCG
AGAGGAGGAAGGCGAGCTGGGCCAGGTTCTGCGAGATGGCGGCGCGGGTGCGCGCCGAGTTCGAGGCCAACGGGTTCGTC
GAGGTGGACGACGGCTACTTCGATCGGCAGGAGGAGAACCGAGCTCTCGTCTGGGAGAATTGCGGGAGAGAGTTCGCTCA
GATGCTCCGGGAGAACAAAGACGGGGAGTTTGGGGACCGCGATGATGAAGCTGTTTCTGATGACGAACACCAACACGAAG
ATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis