Browse Element(s) Details


OsAffx.19272.1.S1_s_at

Description tigr:9639.m03689
TID=OsAffx.19272.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4032011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40270OsAffx.7367.1.S1_at11/1111+23511830..23512264hypothetical protein
LOC_Os11g40284Os.56524.1.S1_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.56524.1.S1_x_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.45212.1.S1_x_at1/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40300NANA11+23526672..23529000hypothetical protein
LOC_Os11g40310NANA11+23530157..23530441hypothetical protein
LOC_Os11g40320OsAffx.19272.1.S1_s_at11/1111+23536078..23538270expressed protein
LOC_Os11g40320OsAffx.19272.1.S1_at11/1111+23536078..23538270expressed protein
LOC_Os11g40330OsAffx.31401.1.S1_at10/1111+23539438..23541288hypothetical protein
LOC_Os11g40340OsAffx.19273.1.S1_at11/1111+23545075..23548802expressed protein
LOC_Os11g40350OsAffx.31402.1.S1_at11/1111+23552451..23552765hypothetical protein
LOC_Os11g40360OsAffx.424.1.S1_at8/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40360OsAffx.7176.1.S1_at1/1111+23558607..23564201hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19272.1.S1_s_at--524--491Chr11:23537685..23537709 (25 bp)
ATCGGCGCGGACGATCTACAGCTTC
LOC_Os11g40320
OsAffx.19272.1.S1_s_at--446--2571Chr11:23537739..23537763 (25 bp)
AACGGCAATTATCGCAGATGATCTG
LOC_Os11g40320
OsAffx.19272.1.S1_s_at--526--7471Chr11:23537763..23537787 (25 bp)
GTGGGAACATTACATAGCTGCAGTC
LOC_Os11g40320
OsAffx.19272.1.S1_s_at--933--9991Chr11:23537777..23537801 (25 bp)
TAGCTGCAGTCACCTTGTCCAATCA
LOC_Os11g40320
OsAffx.19272.1.S1_s_at--231--8711Chr11:23537792..23537816 (25 bp)
TGTCCAATCACTGCGCATACTTGGT
LOC_Os11g40320
OsAffx.19272.1.S1_s_at--153--331Chr11:23537808..23537832 (25 bp)
ATACTTGGTCACTCAGTCACTGGTG
LOC_Os11g40320
OsAffx.19272.1.S1_s_at--431--5611Chr11:23537836..23537860 (25 bp)
GACAATGGCCTCGTCATGAACAAGG
LOC_Os11g40320
OsAffx.19272.1.S1_s_at--953--3211Chr11:23537856..23537880 (25 bp)
CAAGGTCTACGAGGTTGTGCAGAAA
LOC_Os11g40320
OsAffx.19272.1.S1_s_at--517--1531Chr11:23537887..23537911 (25 bp)
AGCAGTGCCATTTCTGGTTGCAAAT
LOC_Os11g40320
OsAffx.19272.1.S1_s_at--316--5131Chr11:23537906..23537930 (25 bp)
GCAAATCCATGGCAGACATCTACAG
LOC_Os11g40320
OsAffx.19272.1.S1_s_at--1145--7351Chr11:23538146..23538170 (25 bp)
GTGAACTCACGACGCACCTGTGGGC
LOC_Os11g40320
Target Sequence 
ATCGGCGCGGACGATCTACAGCTTCGGAATAATAACAAGACCTCTTGTGAAGAAAACGGCAATTATCGCAGATGATCTGT
GGGAACATTACATAGCTGCAGTCACCTTGTCCAATCACTGCGCATACTTGGTCACTCAGTCACTGGTGCCGGACAATGGC
CTCGTCATGAACAAGGTCTACGAGGTTGTGCAGAAAGAGGCCAGCAGTGCCATTTCTGGTTGCAAATCCATGGCAGACAT
CTACAGAAACCTGACAAGGATGGCAAGAACTCCGGACGGGAGTGAAGGCAGGTCGATAGTCAAGATGGGCGCGCAGCTGG
CGGAGCAACTGAGGCTGGCGTACGGCGACGACGAGCAGGTCGCGCTGTGGAGAGACCTGAGCAGGTTTTGGAGGGGGTTC
CTGCTTCACCTTGCCGCGTCCACCAAGGCGGCCAAGCACGACGTGCATCTCCGTGGGCCAGGTGAACTCACGACGCACCT
GTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19272.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis