Browse Element(s) Details


OsAffx.19273.1.S1_at

Description tigr:9639.m03691
TID=OsAffx.19273.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4034011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40284Os.56524.1.S1_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.56524.1.S1_x_at11/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40284Os.45212.1.S1_x_at1/1111+23521700..23525431retrotransposon protein, putative, unclassified, expressed
LOC_Os11g40300NANA11+23526672..23529000hypothetical protein
LOC_Os11g40310NANA11+23530157..23530441hypothetical protein
LOC_Os11g40320OsAffx.19272.1.S1_s_at11/1111+23536078..23538270expressed protein
LOC_Os11g40320OsAffx.19272.1.S1_at11/1111+23536078..23538270expressed protein
LOC_Os11g40330OsAffx.31401.1.S1_at10/1111+23539438..23541288hypothetical protein
LOC_Os11g40340OsAffx.19273.1.S1_at11/1111+23545075..23548802expressed protein
LOC_Os11g40350OsAffx.31402.1.S1_at11/1111+23552451..23552765hypothetical protein
LOC_Os11g40360OsAffx.424.1.S1_at8/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40360OsAffx.7176.1.S1_at1/1111+23558607..23564201hAT family dimerisation domain containing protein
LOC_Os11g40370OsAffx.31403.1.S1_at11/1111+23565758..23567587Protein kinase domain containing protein, expressed
LOC_Os11g40380OsAffx.31404.1.S1_at11/1111+23570270..23574297Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19273.1.S1_at--387--3151Chr11:23545591..23545615 (25 bp)
AATTCAGTGTGCTCGTCAGATGCTC
LOC_Os11g40340
OsAffx.19273.1.S1_at--514--9651Chr11:23545576..23545600 (25 bp)
TCAGATGCTCCATGGTTGTACCTCA
LOC_Os11g40340
OsAffx.19273.1.S1_at--1102--7911Chr11:23545563..23545587 (25 bp)
GGTTGTACCTCACTCAAGAGCATCT
LOC_Os11g40340
OsAffx.19273.1.S1_at--98--671Chr11:23545538..23545562 (25 bp)
ATGACAAGCTCATCGCGACAATACC
LOC_Os11g40340
OsAffx.19273.1.S1_at--533--8011Chr11:23545501..23545525 (25 bp)
GGAGGCGTATCTTCCAGGCACAGAA
LOC_Os11g40340
OsAffx.19273.1.S1_at--677--2931Chr11:23545444..23545468 (25 bp)
AAGGCTAGCCAAGAAGCTCCACGAT
LOC_Os11g40340
OsAffx.19273.1.S1_at--243--10331Chr11:23545358..23545382 (25 bp)
TTTCACCTAGCTCCGATGCACAAGT
LOC_Os11g40340
OsAffx.19273.1.S1_at--164--9211Chr11:23545330..23545354 (25 bp)
TGCCAAGCATCTCAGGTCCAACATG
LOC_Os11g40340
OsAffx.19273.1.S1_at--87--8051Chr11:23545306..23545330 (25 bp)
GGAGTTTATCACCATCATCTGGGCA
LOC_Os11g40340
OsAffx.19273.1.S1_at--988--10571Chr11:23545278..23545302 (25 bp)
TTCTCACACTGTGGCATCGACAAGA
LOC_Os11g40340
OsAffx.19273.1.S1_at--962--1091Chr11:23545162..23545186 (25 bp)
AGTGGAGCATCCGAGCAAGACGCCC
LOC_Os11g40340
Target Sequence 
AATTCAGTGTGCTCGTCAGATGCTCCATGGTTGTACCTCACTCAAGAGCATCTATGACAAGCTCATCGCGACAATACCAT
CCCAGTTGGAGGAGGCGTATCTTCCAGGCACAGAAGAGGAGGGTAGCCAGATATTGCGAGAAGGTGCAAGGCTAGCCAAG
AAGCTCCACGATGAAGACAAAAAGAAGCAGTGGGAGATCCTAGCCAAGGTGTGGGCTCGCTTGCTTGTGCATCTTTCACC
TAGCTCCGATGCACAAGTCCATGCCAAGCATCTCAGGTCCAACATGGAGTTTATCACCATCATCTGGGCACTCTTCTCAC
ACTGTGGCATCGACAAGAGTGAATTGTGGGATTATGTGTCAAAACATCCAAGCAAGATGCCCACCTTGACAACATCCGTC
CAGATAGTGATGGAGAAATACAAGAAACTAGTGGAGCATCCGAGCAAGACGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19273.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis