Browse Element(s) Details


OsAffx.19303.1.S1_at

Description tigr:9639.m03805
TID=OsAffx.19303.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4140011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41370NANA11+24328886..24329739transposon protein, putative, unclassified
LOC_Os11g41380OsAffx.19301.1.S1_at11/1111+24331752..24335438transposon protein, putative, unclassified, expressed
LOC_Os11g41390OsAffx.19302.1.S1_at10/1111+24336987..24342373hypothetical protein
LOC_Os11g41390Os.53334.1.S2_at5/1111+24336987..24342373hypothetical protein
LOC_Os11g41390OsAffx.13405.1.S1_at2/1111+24336987..24342373hypothetical protein
LOC_Os11g41400OsAffx.19303.1.S1_at11/1111+24342684..24343425hypothetical protein
LOC_Os11g41410OsAffx.31428.1.S1_s_at11/1111+24346062..24352615expressed protein
LOC_Os11g41410Os.6083.1.S1_at11/1111+24346062..24352615expressed protein
LOC_Os11g41410OsAffx.19014.1.S1_at1/1111+24346062..24352615expressed protein
LOC_Os11g41420OsAffx.19304.1.S1_at11/1111+24352545..24354916hypothetical protein
LOC_Os11g41430OsAffx.19305.1.S1_at11/1111+24358800..24361953hypothetical protein
LOC_Os11g41430OsAffx.4345.1.S1_at1/1111+24358800..24361953hypothetical protein
LOC_Os11g41440NANA11+24363511..24363999hypothetical protein
LOC_Os11g41450OsAffx.19306.1.S1_at10/1111+24367267..24368870hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19303.1.S1_at--299--3831Chr11:24343325..24343349 (25 bp)
CTGCCTCGCAGGTTGCTGCTATCTG
LOC_Os11g41400
OsAffx.19303.1.S1_at--98--7031Chr11:24343254..24343278 (25 bp)
GTACATGCCAAAGGTGATAACCCTA
LOC_Os11g41400
OsAffx.19303.1.S1_at--1073--1031Chr11:24343243..24343267 (25 bp)
AGGTGATAACCCTAGCTATATCAAA
LOC_Os11g41400
OsAffx.19303.1.S1_at--267--5511Chr11:24343147..24343171 (25 bp)
GAAAATTTCATACAAGGATCCTAAC
LOC_Os11g41400
OsAffx.19303.1.S1_at--1148--7971Chr11:24343099..24343123 (25 bp)
GGATGAAACATGTGAGGCGCCAAAT
LOC_Os11g41400
OsAffx.19303.1.S1_at--421--3511Chr11:24343091..24343115 (25 bp)
CATGTGAGGCGCCAAATTTTGTTAA
LOC_Os11g41400
OsAffx.19303.1.S1_at--1128--8971Chr11:24342894..24342918 (25 bp)
TAATGACGATAGTAACAGATCTGGC
LOC_Os11g41400
OsAffx.19303.1.S1_at--697--2291Chr11:24342855..24342879 (25 bp)
AAAGTTTATCACAGAGAGGGAGTAC
LOC_Os11g41400
OsAffx.19303.1.S1_at--755--51Chr11:24342783..24342807 (25 bp)
ATTCGGAGGACGATTTTTCCAGCAA
LOC_Os11g41400
OsAffx.19303.1.S1_at--493--5631Chr11:24342721..24342745 (25 bp)
GACTCGATTGGTATTCAAACCCTGT
LOC_Os11g41400
OsAffx.19303.1.S1_at--423--6611Chr11:24342716..24342740 (25 bp)
GATTGGTATTCAAACCCTGTGAACC
LOC_Os11g41400
Target Sequence 
CTGCCTCGCAGGTTGCTGCTATCTGGTTAGAGGGGGATGATCCAATAAGAACTTTTGATAGACATGTCTTGGTACATGCC
AAAGGTGATAACCCTAGCTATATCAAAGTATACCATGGTTGTTATGATCCTTTGGTGTATCCTTTATTTAACCCTAATAG
GGAGACTGGGTGGAACCTGAAAATTTCATACAAGGATCCTAACAAGAATCCTTGTGGTGTGGAAATGGATGAAACATGTG
AGGCGCCAAATTTTGTTAATGTACATATCAATGAAGAAAGCACTTTTGATGATCTTCCGGAGAACGAGGTTATTGACAAT
TATCTAGACAATGAAGATGGTAATGACGATAGTAACAGATCTGGCAAAGGGAAAAAGGAAAAGTTTATCACAGAGAGGGA
GTACTATTGCTTCAGGCTGCAGGTTAGAAGGGAACTTCTAAACATCATTTTATTCGGAGGACGATTTTTCCAGCAATGGG
CCGTTGACATGTGCATCAAAATCGAGTCTATGAGACTCGATTGGTATTCAAACCCTGTGAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis