Browse Element(s) Details


OsAffx.19306.1.S1_at

Description tigr:9639.m03810
TID=OsAffx.19306.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4145010/11hypothetical protein
LOC_Os11g414801/11retrotransposon protein, putative, unclassified
LOC_Os03g267041/11retrotransposon protein, putative, unclassified
LOC_Os04g093601/11retrotransposon protein, putative, unclassified
LOC_Os11g030101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41390OsAffx.19302.1.S1_at10/1111+24336987..24342373hypothetical protein
LOC_Os11g41390Os.53334.1.S2_at5/1111+24336987..24342373hypothetical protein
LOC_Os11g41390OsAffx.13405.1.S1_at2/1111+24336987..24342373hypothetical protein
LOC_Os11g41400OsAffx.19303.1.S1_at11/1111+24342684..24343425hypothetical protein
LOC_Os11g41410OsAffx.31428.1.S1_s_at11/1111+24346062..24352615expressed protein
LOC_Os11g41410Os.6083.1.S1_at11/1111+24346062..24352615expressed protein
LOC_Os11g41410OsAffx.19014.1.S1_at1/1111+24346062..24352615expressed protein
LOC_Os11g41420OsAffx.19304.1.S1_at11/1111+24352545..24354916hypothetical protein
LOC_Os11g41430OsAffx.19305.1.S1_at11/1111+24358800..24361953hypothetical protein
LOC_Os11g41430OsAffx.4345.1.S1_at1/1111+24358800..24361953hypothetical protein
LOC_Os11g41440NANA11+24363511..24363999hypothetical protein
LOC_Os11g41450OsAffx.19306.1.S1_at10/1111+24367267..24368870hypothetical protein
LOC_Os11g41460NANA11+24369785..24371791hypothetical protein
LOC_Os11g41470OsAffx.10632.1.S1_at1/1111+24372641..24375671retrotransposon protein, putative, unclassified
LOC_Os11g41480OsAffx.19306.1.S1_at1/1111+24378500..24384390retrotransposon protein, putative, unclassified
LOC_Os11g41490OsAffx.19308.1.S1_at11/1111+24385207..24388322hypothetical protein
LOC_Os11g41500OsAffx.19309.1.S1_at11/1111+24391449..24392144NC domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19306.1.S1_at--416--9231Chr11:24368814..24368838 (25 bp)
TCCAGACTCTGTCTGCATGGTCCAG
LOC_Os11g41450
OsAffx.19306.1.S1_at--1030--1396Chr10:1338083..1338105 (23 bp)
AGACTTCTCAAGATCCATCGCCGTT
NONE
OsAffx.19306.1.S1_at--638--571Chr11:24368721..24368745 (25 bp)
ATCCATCGCCGTTGGAGGATCGCCG
LOC_Os11g41450
OsAffx.19306.1.S1_at--902--2111NONE
ACAGGATGAAGGAATGCCGGGAATT
NONE
OsAffx.19306.1.S1_at--355--7371Chr11:24367422..24367446 (25 bp)
GTGACATTGAGGCATGTTCCTCGAG
LOC_Os11g41450
OsAffx.19306.1.S1_at--956--4991Chr11:24367411..24367435 (25 bp)
GCATGTTCCTCGAGAGCAGAACATT
LOC_Os11g41450
OsAffx.19306.1.S1_at--1111--5476Chr11:24383546..24383570 (25 bp)
GAACATTGAGGCTAATGATTTGGCT
LOC_Os11g41480
OsAffx.19306.1.S1_at--484--1671Chr11:24367349..24367373 (25 bp)
AGCCGATGGTTAAAGATGTGGATAT
LOC_Os11g41450
OsAffx.19306.1.S1_at--404--1331Chr11:24367324..24367348 (25 bp)
AGAGGTTGCTACAATTACGACCGAT
LOC_Os11g41450
OsAffx.19306.1.S1_at--893--3131Chr11:24367312..24367336 (25 bp)
AATTACGACCGATCATTGGAGGATG
LOC_Os11g41450
OsAffx.19306.1.S1_at--121--10851Chr11:24367297..24367321 (25 bp)
TTGGAGGATGAGTTATACTATCGGA
LOC_Os11g41450
Target Sequence 
TCCAGACTCTGTCTGCATGGTCCAGCGACCAGGGAGGGCACCGTCGTCCTACAGCTTCTTCATGGACGCGGTGTTCGAGG
AAGACTTCTCAAGATCCATCGCCGTTGGAGGATCGCCGGAGAACAGGATGAAGGAATGCCGGGAATTAATGAATAATTTT
TGGTTGGTGACATTGAGGCATGTTCCTCGAGAGCAGAACATTGAGGCTAATGATTTGGCTCAAGGGTCATCGGGATATAA
GCCGATGGTTAAAGATGTGGATATAGAGGTTGCTACAATTACGACCGATCATTGGAGGATGAGTTATACTATCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis