Browse Element(s) Details


OsAffx.19314.1.S1_s_at

Description tigr:9639.m03850
TID=OsAffx.19314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=N7-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4186011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41820Os.27324.1.S1_a_at11/1111+24647368..24652097U2 snRNP auxilliary factor, large subunit, splicing factor family protein, expressed
LOC_Os11g41830Os.50046.1.S1_at11/1111+24652445..24654168expressed protein
LOC_Os11g41830OsAffx.19315.1.S1_x_at1/1111+24652445..24654168expressed protein
LOC_Os11g41840OsAffx.19315.1.S1_x_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41840Os.54779.1.S1_s_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41850Os.54779.1.S1_s_at11/1111+24664429..24666390Sugar transporter family protein, expressed
LOC_Os11g41860Os.16002.1.S1_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41860OsAffx.19314.1.S1_s_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41870Os.22949.1.S1_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870OsAffx.19315.1.S1_x_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11062.1.S1_at9/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11829.1.S1_at3/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.54779.1.S1_s_at1/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41880OsAffx.7379.1.S1_at10/1111+24679945..24682122Potyvirus VPg interacting protein, putative
LOC_Os11g41890Os.9816.1.S2_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed
LOC_Os11g41890Os.9816.1.S1_a_at11/1111+24691659..24695993RNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19314.1.S1_s_at--446--171Chr11:24670684..24670708 (25 bp)
ATTTTGTTAGCGATGAGCTGCTCGA
LOC_Os11g41860
OsAffx.19314.1.S1_s_at--944--8991Chr11:24671676..24671700 (25 bp)
TGAAGGTTATTTCCGTTTGGTGCTC
LOC_Os11g41860
OsAffx.19314.1.S1_s_at--1073--10231Chr11:24671691..24671715 (25 bp)
TTTGGTGCTCCGACGAAACCAGGAT
LOC_Os11g41860
OsAffx.19314.1.S1_s_at--698--5531Chr11:24671705..24671729 (25 bp)
GAAACCAGGATGTCCACGGAAGGAT
LOC_Os11g41860
OsAffx.19314.1.S1_s_at--266--1611Chr11:24671736..24671760 (25 bp)
AGCTGACGAGGAAGTGCCCTCTCCT
LOC_Os11g41860
OsAffx.19314.1.S1_s_at--504--1131Chr11:24671748..24671772 (25 bp)
AGTGCCCTCTCCTAGAGGAGATCGT
LOC_Os11g41860
OsAffx.19314.1.S1_s_at--266--4291Chr11:24671912..24671936 (25 bp)
CCTCGCCTGGAGCTTCTCGATGTGT
LOC_Os11g41860
OsAffx.19314.1.S1_s_at--887--3391Chr11:24671938..24671962 (25 bp)
CAGCTGCTGGGATTTGTGTGTCGAC
LOC_Os11g41860
OsAffx.19314.1.S1_s_at--212--1611Chr11:24671973..24671997 (25 bp)
AGCTGCTTGCCAAGTGCGCGAGGAT
LOC_Os11g41860
OsAffx.19314.1.S1_s_at--403--1131Chr11:24671985..24672009 (25 bp)
AGTGCGCGAGGATCAGGACGCTCAA
LOC_Os11g41860
OsAffx.19314.1.S1_s_at--963--3231Chr11:24672007..24672031 (25 bp)
CAAGCTGCCGCCCAGTGAAGAGGAT
LOC_Os11g41860
Target Sequence 
ATTTTGTTAGCGATGAGCTGCTCGAGTATATTGGAGACAGGTCGCCTTCTCTGAAGGTTATTTCCGTTTGGTGCTCCGAC
GAAACCAGGATGTCCACGGAAGGATTCGCCGAGCTGACGAGGAAGTGCCCTCTCCTAGAGGAGATCGTCCTCAGCAGCGG
CGGCCATCGCCGTCCCCCGCTGCCGCGGCTCGCGCTCGCGGTGGCGGAGCTGCGCCACCTGCGGCGGCTCACTGTCCAGG
GCATCGGCGTCAGCAACGACGAGCTCACGGCCATCGTCGATGGCTGCCCTCGCCTGGAGCTTCTCGATGTGTGCAGCTGC
TGGGATTTGTGTGTCGACGACGACGCCCAGCTGCTTGCCAAGTGCGCGAGGATCAGGACGCTCAAGCTGCCGCCCAGTGA
AGAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19314.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis