Browse Element(s) Details


OsAffx.19377.1.S1_at

Description tigr:9639.m04170
TID=OsAffx.19377.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=kinesin heavy chain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4488011/11kinesin motor protein, putative, expressed
LOC_Os10g018901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44830OsAffx.31479.1.S1_x_at11/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44830OsAffx.31479.4.S1_x_at9/1111+26622111..26628197AT hook motif-containing protein, putative, expressed
LOC_Os11g44840OsAffx.31479.5.S1_x_at9/1111+26629929..26634029hypothetical protein
LOC_Os11g44850OsAffx.31480.1.S1_at11/1111+26637773..26638612hypothetical protein
LOC_Os11g44860OsAffx.19376.1.S1_x_at11/1111+26642585..26646473Protein kinase domain containing protein, expressed
LOC_Os11g44870Os.35688.1.S1_at11/1111+26648502..26650903expressed protein
LOC_Os11g44880OsAffx.19377.1.S1_at11/1111+26651962..26658489kinesin motor protein, putative, expressed
LOC_Os11g44880Os.57189.1.S1_at1/1111+26651962..26658489kinesin motor protein, putative, expressed
LOC_Os11g44890OsAffx.31481.1.S1_at11/1111+26660734..26663541Zinc knuckle family protein, expressed
LOC_Os11g44900Os.49922.1.S1_at10/1111+26668274..26671116retrotransposon protein, putative, unclassified, expressed
LOC_Os11g44910Os.53980.1.S1_at11/1111+26672516..26677210ATP-dependent DNA helicase, RecQ family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
GO:0008017molecular_functionmicrotubule binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19377.1.S1_at--271--5391Chr11:26652882..26652906 (25 bp)
GAAGCAATGGCACTCCCAGACAGAA
LOC_Os11g44880
OsAffx.19377.1.S1_at--956--6471Chr11:26652823..26652847 (25 bp)
GATACATCTTCATGGCTTGATACTA
LOC_Os11g44880
OsAffx.19377.1.S1_at--246--7851Chr11:26652748..26652772 (25 bp)
GGTAGCAGCAATTCCCTACTAGAAT
LOC_Os11g44880
OsAffx.19377.1.S1_at--1158--8632Chr11:26652723..26652747 (25 bp)
TGGGACCTGATGCTACACAAGATGT
LOC_Os11g44880
OsAffx.19377.1.S1_at--1009--5531Chr11:26652684..26652708 (25 bp)
GAAACAGTCCTGAGCCGCAATGGAG
LOC_Os11g44880
OsAffx.19377.1.S1_at--1104--5671Chr11:26652625..26652649 (25 bp)
GACTTTGAGGTCACAACCAGTTGCT
LOC_Os11g44880
OsAffx.19377.1.S1_at--303--2651Chr11:26652611..26652635 (25 bp)
AACCAGTTGCTCGTCAGAACAAGAT
LOC_Os11g44880
OsAffx.19377.1.S1_at--356--1271Chr11:26652590..26652614 (25 bp)
AGATATGGTGCGTCCAACAAGTGCA
LOC_Os11g44880
OsAffx.19377.1.S1_at--880--1111Chr11:26652571..26652595 (25 bp)
AGTGCACCAAAAGCTCCAGGTTCTG
LOC_Os11g44880
OsAffx.19377.1.S1_at--15--7911Chr11:26652553..26652577 (25 bp)
GGTTCTGCAAATGGGAGTGCCTCAA
LOC_Os11g44880
OsAffx.19377.1.S1_at--799--3131Chr11:26652530..26652554 (25 bp)
AATTGCAAGGAAGGCCCAACCCAAG
LOC_Os11g44880
Target Sequence 
GAAGCAATGGCACTCCCAGACAGAAGAAACGAAACTTTGAATTGCCAGATGTAGAGAATGATACATCTTCATGGCTTGAT
ACTAGTTCTCAGAAGGAAGCAGCCTTGGGAGAATGGGTTAACAACTCCCAATTTGGTAGCAGCAATTCCCTACTAGAATT
GGGACCTGATGCTACACAAGATGTAGTCTTCTATCAAAGAAACAGTCCTGAGCCGCAATGGAGTTGGGCTGGGTCTGTCG
CAACAGAGGATTCTGATGACTTTGAGGTCACAACCAGTTGCTCGTCAGAACAAGATATGGTGCGTCCAACAAGTGCACCA
AAAGCTCCAGGTTCTGCAAATGGGAGTGCCTCAATTGCAAGGAAGGCCCAACCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis