Browse Element(s) Details


OsAffx.19383.1.S1_x_at

Description tigr:9639.m04194
TID=OsAffx.19383.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4515011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45120NANA11+26801402..26803020hypothetical protein
LOC_Os11g45130OsAffx.19382.1.S1_at11/1111+26812135..26817326NB-ARC domain containing protein, expressed
LOC_Os11g45130Os.17045.1.S1_s_at11/1111+26812135..26817326NB-ARC domain containing protein, expressed
LOC_Os11g45140OsAffx.31484.1.S1_at11/1111+26818923..26819838hypothetical protein
LOC_Os11g45140OsAffx.18095.1.S1_x_at1/1111+26818923..26819838hypothetical protein
LOC_Os11g45150OsAffx.19383.1.S1_x_at11/1111+26822765..26822965hypothetical protein
LOC_Os11g45160OsAffx.19384.1.S1_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.19384.1.S1_x_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.7416.1.S1_at1/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45170NANA11+26830928..26831605hypothetical protein
LOC_Os11g45180Os.13019.1.S1_at3/1111+26835221..26838316NB-ARC domain containing protein
LOC_Os11g45190Os.4123.1.S1_s_at2/1111+26843313..26846411NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19383.1.S1_x_at--1034--6251Chr11:26822890..26822914 (25 bp)
GATGAGGACGGTGAGGTGGCTTTGC
LOC_Os11g45150
OsAffx.19383.1.S1_x_at--382--931Chr11:26822886..26822910 (25 bp)
AGGACGGTGAGGTGGCTTTGCGTTC
LOC_Os11g45150
OsAffx.19383.1.S1_x_at--927--7531Chr11:26822875..26822899 (25 bp)
GTGGCTTTGCGTTCAACAGCAGTGG
LOC_Os11g45150
OsAffx.19383.1.S1_x_at--1142--8291Chr11:26822873..26822897 (25 bp)
GGCTTTGCGTTCAACAGCAGTGGCT
LOC_Os11g45150
OsAffx.19383.1.S1_x_at--1127--3671Chr11:26822871..26822895 (25 bp)
CTTTGCGTTCAACAGCAGTGGCTGT
LOC_Os11g45150
OsAffx.19383.1.S1_x_at--669--10691Chr11:26822869..26822893 (25 bp)
TTGCGTTCAACAGCAGTGGCTGTGG
LOC_Os11g45150
OsAffx.19383.1.S1_x_at--86--8631Chr11:26822844..26822868 (25 bp)
TGGTGGTGGCCATGACTACGGTCAC
LOC_Os11g45150
OsAffx.19383.1.S1_x_at--526--7491Chr11:26822842..26822866 (25 bp)
GTGGTGGCCATGACTACGGTCACCG
LOC_Os11g45150
OsAffx.19383.1.S1_x_at--281--7711Chr11:26822840..26822864 (25 bp)
GGTGGCCATGACTACGGTCACCGGA
LOC_Os11g45150
OsAffx.19383.1.S1_x_at--378--7551Chr11:26822839..26822863 (25 bp)
GTGGCCATGACTACGGTCACCGGAG
LOC_Os11g45150
OsAffx.19383.1.S1_x_at--995--8451Chr11:26822838..26822862 (25 bp)
TGGCCATGACTACGGTCACCGGAGG
LOC_Os11g45150
Target Sequence 
GATGAGGACGGTGAGGTGGCTTTGCGTTCAACAGCAGTGGCTGTGGTGGTGGTGGCCATGACTACGGTCACCGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19383.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis