Browse Element(s) Details


OsAffx.19384.1.S1_x_at

Description tigr:9639.m04195
TID=OsAffx.19384.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4516011/11NB-ARC domain containing protein
LOC_Os11g449706/11NB-ARC domain containing protein
LOC_Os11g407801/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g45130OsAffx.19382.1.S1_at11/1111+26812135..26817326NB-ARC domain containing protein, expressed
LOC_Os11g45130Os.17045.1.S1_s_at11/1111+26812135..26817326NB-ARC domain containing protein, expressed
LOC_Os11g45140OsAffx.31484.1.S1_at11/1111+26818923..26819838hypothetical protein
LOC_Os11g45140OsAffx.18095.1.S1_x_at1/1111+26818923..26819838hypothetical protein
LOC_Os11g45150OsAffx.19383.1.S1_x_at11/1111+26822765..26822965hypothetical protein
LOC_Os11g45160OsAffx.19384.1.S1_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.19384.1.S1_x_at11/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45160OsAffx.7416.1.S1_at1/1111+26828407..26830573NB-ARC domain containing protein
LOC_Os11g45170NANA11+26830928..26831605hypothetical protein
LOC_Os11g45180Os.13019.1.S1_at3/1111+26835221..26838316NB-ARC domain containing protein
LOC_Os11g45190Os.4123.1.S1_s_at2/1111+26843313..26846411NB-ARC domain containing protein
LOC_Os11g45200NANA11+26849209..26853980retrotransposon protein, putative, unclassified
LOC_Os11g45210OsAffx.31486.1.S1_at11/1111+26855242..26856382expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19384.1.S1_x_at--111--153Chr11:26829803..26829827 (25 bp)
ATTACTATGAGCTGATCCACCGGAA
LOC_Os11g45160
OsAffx.19384.1.S1_x_at--497--10192Chr11:26829848..26829872 (25 bp)
TATATTATGACCACAGCAGCTGCAA
LOC_Os11g45160
OsAffx.19384.1.S1_x_at--653--7832Chr11:26829952..26829976 (25 bp)
GGTAACACTGTGTCTAAACTTCGAC
LOC_Os11g45160
OsAffx.19384.1.S1_x_at--1110--2512Chr11:26829968..26829992 (25 bp)
AACTTCGACGTGTTTCAGTCGTCAC
LOC_Os11g45160
OsAffx.19384.1.S1_x_at--343--6051Chr11:26830101..26830125 (25 bp)
GAGATTTCCTTATCTTCGTGTTGTA
LOC_Os11g45160
OsAffx.19384.1.S1_x_at--244--6573Chr11:26830135..26830159 (25 bp)
GATTCATTTGTACCAAGCATCCCAG
LOC_Os11g45160
OsAffx.19384.1.S1_x_at--838--2712Chr11:26830149..26830173 (25 bp)
AAGCATCCCAGGTTGCATCGGGAAT
LOC_Os11g45160
OsAffx.19384.1.S1_x_at--949--571Chr11:26830177..26830201 (25 bp)
ATCCATCTACGTTTGTCTACAATTG
LOC_Os11g45160
OsAffx.19384.1.S1_x_at--588--8531Chr11:26830236..26830260 (25 bp)
TGGACGCTTCGGTTGTTTGATGCAA
LOC_Os11g45160
OsAffx.19384.1.S1_x_at--341--8852Chr11:26830253..26830521 (25 bp)
TGATGCAAGCTCATTATCAGCACAT
LOC_Os11g45160
OsAffx.19384.1.S1_x_at--1113--5111Chr11:26830516..26830540 (25 bp)
GCACATCAACCTTCTTATTGAGCAG
LOC_Os11g45160
Target Sequence 
ATTACTATGAGCTGATCCACCGGAACCTTCTTCAACCAGATGGTTTATATTATGACCACAGCAGCTGCAAAATGCATGAT
CTTTTAAGGCAGCTTGCTTGTTATTTGTCAAGGGAAGAATGTTTTGTTGGAAACCCAGAATCATTGGTAGGTAACACTGT
GTCTAAACTTCGACGTGTTTCAGTCGTCACAGATAAGAACATGGTAATGTTACCTAGCATGGACGAGGTGCAATATAAAG
TAAGGACATGGAAAACTTCTTATGAGAAAACACTCAGAGTTGATAATTCATTTTTCAAGAGATTTCCTTATCTTCGTGTT
GTAGATTGGACTGATTCATTTGTACCAAGCATCCCAGGTTGCATCGGGAATTTGATCCATCTACGTTTGTCTACAATTGG
ACATAGTGATAATGTATGGATGCCAAAATTATTTGGACGCTTCGGTTGTTTGATGCAAGCTCATTATCAGCACATCAACC
TTCTTATTGAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19384.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis