Browse Element(s) Details


OsAffx.19431.1.S1_at

Description tigr:9639.m04471
TID=OsAffx.19431.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g477909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47730Os.8604.1.S1_a_at11/1111+28235028..28236831expressed protein
LOC_Os11g47740OsAffx.31527.1.S1_at11/1111+28242676..28243729hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_x_at11/1111+28244398..28245655hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_at9/1111+28244398..28245655hypothetical protein
LOC_Os11g47760Os.57477.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47760Os.14.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47770OsAffx.31529.1.S1_at9/1111+28251466..28253263selT/selW/selH selenoprotein domain containing protein, expressed
LOC_Os11g47780OsAffx.7445.1.S1_at11/1111+28254030..28257720NB-ARC domain containing protein
LOC_Os11g47790OsAffx.19431.1.S1_at9/1111+28260460..28262218hypothetical protein
LOC_Os11g47790OsAffx.773.1.S1_x_at1/1111+28260460..28262218hypothetical protein
LOC_Os11g47800Os.11025.1.S1_at11/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47800OsAffx.29207.1.S1_x_at1/1111+28262762..28266232GTP1/OBG family protein, expressed
LOC_Os11g47820Os.8051.1.S1_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os11g47820Os.8051.2.S1_x_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19431.1.S1_at--323--7491Chr11:28260522..28260546 (25 bp)
GTGGGAGCGGCAAACAACCACCGGC
LOC_Os11g47790
OsAffx.19431.1.S1_at--1092--831Chr11:28260635..28260659 (25 bp)
ATGGAGATGAGCTGCGTCATGCCGA
LOC_Os11g47790
OsAffx.19431.1.S1_at--827--691Chr11:28260641..28260665 (25 bp)
ATGAGCTGCGTCATGCCGAGGCCCT
LOC_Os11g47790
OsAffx.19431.1.S1_at--184--3811Chr11:28260689..28260713 (25 bp)
CTCCGTGTCGCTGGTACGAGGACGA
LOC_Os11g47790
OsAffx.19431.1.S1_at--1071--1851NONE
ACGAGGAGCAGAGTCGCGGAACCAC
NONE
OsAffx.19431.1.S1_at--257--1531NONE
AGCAGAGTCGCGGAACCACCGAGGA
NONE
OsAffx.19431.1.S1_at--800--9332Chr11:28262079..28262103 (25 bp)
TCGCCGAGGTCGTTGTAGACGTTGT
LOC_Os11g47790
OsAffx.19431.1.S1_at--685--4031Chr11:28262089..28262113 (25 bp)
CGTTGTAGACGTTGTAGCGGTAGAC
LOC_Os11g47790
OsAffx.19431.1.S1_at--397--9991Chr11:28262103..28262127 (25 bp)
TAGCGGTAGACGTGGTCGTGCTCCT
LOC_Os11g47790
OsAffx.19431.1.S1_at--916--1891Chr11:28262112..28262166 (25 bp)
ACGTGGTCGTGCTCCTGGTTACGGA
LOC_Os11g47790
OsAffx.19431.1.S1_at--591--6771Chr11:28262159..28262183 (25 bp)
GTTACGGAGCTCGTTGTCGCGGTAC
LOC_Os11g47790
Target Sequence 
GTGGGAGCGGCAAACAACCACCGGCCACAGCAGCTGCCACAACGGCGCACCCTCTGCCGCCGACATCGTGGTGGAGGGCG
ACCTGGAGGCCGGAGGTGGAGTTGGGGTGGATGATGGAGATGAGCTGCGTCATGCCGAGGCCCTCCGCGACCATCTCATG
CACCGTCCTCCGTGTCGCTGGTACGAGGACGAGGAGCAGAGTCGCGGAACCACCGAGGACGGGGCGAGGGTTGTCGGAGT
CGGGCTCGCCGAGGTCGTTGTAGACGTTGTAGCGGTAGACGTGGTCGTGCTCCTGGTTACGGAGCTCGTTGTCGCGGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19431.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis