Browse Element(s) Details


OsAffx.19434.1.S1_at

Description tigr:9639.m04489
TID=OsAffx.19434.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ribulose bisphosphate carboxylaseoxygenase activase b, chloroplast precursor (rubisco activase b) (ra b). (barley)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4798011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47940NANA11+28355908..28359106hypothetical protein
LOC_Os11g47944NANA11+28360913..28361757Thaumatin family protein
LOC_Os11g47950OsAffx.7446.1.S1_at10/1111+28363415..28365589Cyclin, N-terminal domain containing protein
LOC_Os11g47960OsAffx.7447.1.S1_at11/1111+28374523..28374975hypothetical protein
LOC_Os11g47970Os.11573.7.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A2_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.2.A1_a_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47970Os.11573.5.A1_x_at11/1111+28374859..28378053Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor, putative, expressed
LOC_Os11g47980OsAffx.19434.1.S1_at11/1111+28380025..28381904expressed protein
LOC_Os11g47980Os.22640.1.A1_at1/1111+28380025..28381904expressed protein
LOC_Os11g47990OsAffx.27915.1.S1_at4/1111+28382689..28382952hypothetical protein
LOC_Os11g48000OsAffx.19436.1.S1_at11/1111+28389298..28390942Zinc finger, C2H2 type family protein, expressed
LOC_Os11g48010OsAffx.19437.1.S1_at11/1111+28395006..28395278hypothetical protein
LOC_Os11g48020Os.9207.1.S1_at11/1111+28395918..28399184Sterol desaturase family protein, expressed
LOC_Os11g48030Os.51861.1.S1_at11/1111+28399907..28402478Skp1 family, tetramerisation domain containing protein, expressed
LOC_Os11g48040Os.1813.1.S1_at11/1111+28403341..28407097Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0009507cellular_componentchloroplast
GO:0030234molecular_functionenzyme regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19434.1.S1_at--989--5351Chr11:28380676..28380700 (25 bp)
GAAGATGTGCGTGCTGTTCATCAAC
LOC_Os11g47980
OsAffx.19434.1.S1_at--1129--7291Chr11:28380666..28380690 (25 bp)
GTGCTGTTCATCAACGACCTGGACG
LOC_Os11g47980
OsAffx.19434.1.S1_at--358--4691Chr11:28380637..28380661 (25 bp)
GCGGCACGACGCAGTACACGGTGAA
LOC_Os11g47980
OsAffx.19434.1.S1_at--511--5751Chr11:28380594..28380618 (25 bp)
GACGCTGATGAACATCGCGGACAAC
LOC_Os11g47980
OsAffx.19434.1.S1_at--290--4091Chr11:28380489..28380513 (25 bp)
CGACGGGCGCATGGACAAGTTCTAC
LOC_Os11g47980
OsAffx.19434.1.S1_at--1051--4611Chr11:28380451..28380475 (25 bp)
GCGAGGACCGCATTGGCGTGTGCAG
LOC_Os11g47980
OsAffx.19434.1.S1_at--153--7591Chr11:28380426..28380450 (25 bp)
GGGCATCTTCCGCAGCGACAAGGTC
LOC_Os11g47980
OsAffx.19434.1.S1_at--1103--1431Chr11:28380200..28380224 (25 bp)
AGAACGTCAAGAGGGTGCGGCTCGC
LOC_Os11g47980
OsAffx.19434.1.S1_at--196--9131Chr11:28380185..28380209 (25 bp)
TGCGGCTCGCCGATAAGTACCTCAG
LOC_Os11g47980
OsAffx.19434.1.S1_at--391--351Chr11:28380173..28380197 (25 bp)
ATAAGTACCTCAGCGAGGCGGCGCT
LOC_Os11g47980
OsAffx.19434.1.S1_at--967--4611Chr11:28380125..28380149 (25 bp)
GCGAGTTCTACGGCAAGGCCGAGCA
LOC_Os11g47980
Target Sequence 
GAAGATGTGCGTGCTGTTCATCAACGACCTGGACGCGGGGCGGCACGACGCAGTACACGGTGAACAACCAGATGGTGAAC
GCGACGCTGATGAACATCGCGGACAACCCCACCAACGTGCAGCTCCCAGGGATGTACAACCCCCGTCCCCATCATCGTCA
CCGGCAACGACTTCTCCCGCTCATCCGCGACGGGCGCATGGACAAGTTCTACTGGGCTCCCACCCGCGAGGACCGCATTG
GCGTGTGCAGGGGCATCTTCCGCAGCGACAAGGTCCCCGACGCGTTCCCATCGACTTCTTCGGGGCGCTGCGGGCGCGGG
TGTACGGCGACGAGGTGCGGCGGTGGGTGGCGGAGATCGGGGTGGAGAACATCGGCAGGAGGCTGGAGAACGTCAAGAGG
GTGCGGCTCGCCGATAAGTACCTCAGCGAGGCGGCGCTCGGAGACGCCAACCACGACTCCGGCGAGTTCTACGGCAAGGC
CGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis