Browse Element(s) Details


Os.1813.1.S1_at

Description gb:AK061318.1
DB_XREF= gi:32971336
TID=Os.1813.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1813 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-031-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-D12, full insert sequence.
FL= gb:AK104090.1 gb:AK061318.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4804011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47980OsAffx.19434.1.S1_at11/1111+28380025..28381904expressed protein
LOC_Os11g47980Os.22640.1.A1_at1/1111+28380025..28381904expressed protein
LOC_Os11g47990OsAffx.27915.1.S1_at4/1111+28382689..28382952hypothetical protein
LOC_Os11g48000OsAffx.19436.1.S1_at11/1111+28389298..28390942Zinc finger, C2H2 type family protein, expressed
LOC_Os11g48010OsAffx.19437.1.S1_at11/1111+28395006..28395278hypothetical protein
LOC_Os11g48020Os.9207.1.S1_at11/1111+28395918..28399184Sterol desaturase family protein, expressed
LOC_Os11g48030Os.51861.1.S1_at11/1111+28399907..28402478Skp1 family, tetramerisation domain containing protein, expressed
LOC_Os11g48040Os.1813.1.S1_at11/1111+28403341..28407097Mitochondrial carrier protein, expressed
LOC_Os11g48050Os.9463.1.S1_at11/1111+28407322..28409136expressed protein
LOC_Os11g48060Os.5982.1.S1_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48060OsAffx.31531.1.S1_s_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48064OsAffx.7448.1.S1_at11/1111+28423397..28423768hypothetical protein
LOC_Os11g48070Os.28457.1.S1_at10/1111+28424941..28427753GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g48080Os.36435.1.S1_at11/1111+28429443..28430701pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os11g48080Os.36435.2.S1_x_at6/1111+28429443..28430701pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os11g48090Os.19577.1.S2_at11/1111+28431429..28442894ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os11g48090Os.19577.1.S1_at10/1111+28431429..28442894ATP-dependent DNA helicase, RecQ family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1813.1.S1_at--290--1311Chr11:28404509..28404533 (25 bp)
AGATGATGTGGTCACTCACCTCTTA
LOC_Os11g48040
Os.1813.1.S1_at--991--10551Chr11:28404552..28404576 (25 bp)
TTCTTCGCTGTCTGTGTTGGTTCTC
LOC_Os11g48040
Os.1813.1.S1_at--581--1471Chr11:28405231..28405255 (25 bp)
AGAATGATGGGTGACTCGGCCTACA
LOC_Os11g48040
Os.1813.1.S1_at--152--5631Chr11:28405243..28405267 (25 bp)
GACTCGGCCTACACAAGTACTATTG
LOC_Os11g48040
Os.1813.1.S1_at--1083--691Chr11:28406516..28406535 (20 bp)
ATGATGGACCTCTGGCATTTTACAA
LOC_Os11g48040
Os.1813.1.S1_at--518--4951Chr11:28406525..28406549 (25 bp)
GCATTTTACAAAGGCTTCCTCCCAA
LOC_Os11g48040
Os.1813.1.S1_at--951--10631Chr11:28406540..28406564 (25 bp)
TTCCTCCCAAACTTTGCTAGACTGG
LOC_Os11g48040
Os.1813.1.S1_at--664--2471Chr11:28406742..28406766 (25 bp)
AACACATGGTTTTTGCCATCGTGGA
LOC_Os11g48040
Os.1813.1.S1_at--1077--7851Chr11:28406822..28406846 (25 bp)
GGTTAACATCCTCCCTGAGAATTGG
LOC_Os11g48040
Os.1813.1.S1_at--816--9731Chr11:28406894..28406918 (25 bp)
TAATAAATCTTAGCGGGCCTTTGCA
LOC_Os11g48040
Os.1813.1.S1_at--470--10731Chr11:28406914..28406938 (25 bp)
TTGCATGACCCCTGACAGAATTGGT
LOC_Os11g48040
Target Sequence 
AGATGATGTGGTCACTCACCTCTTATCTGGTCTGGGCGCGGGCTTCTTCGCTGTCTGTGTTGGTTCTCCAGTGGATGTGG
TCAAGTCAAGAATGATGGGTGACTCGGCCTACACAAGTACTATTGATTGTTTCGTGAAGACGCTGAAGAATGATGGACCT
CTGGCATTTTACAAAGGCTTCCTCCCAAACTTTGCTAGACTGGGATCATGGAATGTGATAATGTTCTTGACACTGGAGCA
GGTCCAGAAGCTGTTTGTGAGGAAACCTGGTAGTTGAAGATTATAACACATGGTTTTTGCCATCGTGGAAAAAGAGGATG
CGTACATTTTTTTTTTCTTAATCTTCTCTTACACAAGAAGCAACGGTTAACATCCTCCCTGAGAATTGGGGAACAAGGAA
GAAACTTGAATGCTCAATTGTGAGAACGCTGTTGAGTAATAAATCTTAGCGGGCCTTTGCATGACCCCTGACAGAATTGG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis