Browse Element(s) Details


Os.5982.1.S1_at

Description gb:AK060544.1
DB_XREF= gi:32970562
TID=Os.5982.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5982 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F03, full insert sequence.
FL= gb:AK060544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4806011/11Multicopper oxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g48000OsAffx.19436.1.S1_at11/1111+28389298..28390942Zinc finger, C2H2 type family protein, expressed
LOC_Os11g48010OsAffx.19437.1.S1_at11/1111+28395006..28395278hypothetical protein
LOC_Os11g48020Os.9207.1.S1_at11/1111+28395918..28399184Sterol desaturase family protein, expressed
LOC_Os11g48030Os.51861.1.S1_at11/1111+28399907..28402478Skp1 family, tetramerisation domain containing protein, expressed
LOC_Os11g48040Os.1813.1.S1_at11/1111+28403341..28407097Mitochondrial carrier protein, expressed
LOC_Os11g48050Os.9463.1.S1_at11/1111+28407322..28409136expressed protein
LOC_Os11g48060Os.5982.1.S1_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48060OsAffx.31531.1.S1_s_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48064OsAffx.7448.1.S1_at11/1111+28423397..28423768hypothetical protein
LOC_Os11g48070Os.28457.1.S1_at10/1111+28424941..28427753GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g48080Os.36435.1.S1_at11/1111+28429443..28430701pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os11g48080Os.36435.2.S1_x_at6/1111+28429443..28430701pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os11g48090Os.19577.1.S2_at11/1111+28431429..28442894ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os11g48090Os.19577.1.S1_at10/1111+28431429..28442894ATP-dependent DNA helicase, RecQ family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5982.1.S1_at--1031--3411Chr11:28417807..28417831 (25 bp)
CAGACAACCCAGGTATTGATTTTAA
LOC_Os11g48060
Os.5982.1.S1_at--1100--6451Chr11:28417849..28417873 (25 bp)
GATAAATAACCCCTTCTGTTTCCAG
LOC_Os11g48060
Os.5982.1.S1_at--483--9791Chr11:28417855..28417879 (25 bp)
TAACCCCTTCTGTTTCCAGACACAT
LOC_Os11g48060
Os.5982.1.S1_at--1088--1791Chr11:28417857..28417881 (25 bp)
ACCCCTTCTGTTTCCAGACACATTG
LOC_Os11g48060
Os.5982.1.S1_at--853--4171Chr11:28417859..28417883 (25 bp)
CCCTTCTGTTTCCAGACACATTGAT
LOC_Os11g48060
Os.5982.1.S1_at--16--10611Chr11:28417862..28417886 (25 bp)
TTCTGTTTCCAGACACATTGATTGA
LOC_Os11g48060
Os.5982.1.S1_at--930--3871Chr11:28417864..28417888 (25 bp)
CTGTTTCCAGACACATTGATTGAGC
LOC_Os11g48060
Os.5982.1.S1_at--527--6851Chr11:28417866..28417890 (25 bp)
GTTTCCAGACACATTGATTGAGCTG
LOC_Os11g48060
Os.5982.1.S1_at--1092--10671Chr11:28417868..28417892 (25 bp)
TTCCAGACACATTGATTGAGCTGTT
LOC_Os11g48060
Os.5982.1.S1_at--760--4351Chr11:28417870..28417894 (25 bp)
CCAGACACATTGATTGAGCTGTTAT
LOC_Os11g48060
Os.5982.1.S1_at--350--5631Chr11:28417873..28417897 (25 bp)
GACACATTGATTGAGCTGTTATATT
LOC_Os11g48060
Target Sequence 
CAGACAACCCAGGTATTGATTTTAAAACCTATGTTTTTTTAAGATAAATAACCCCTTCTGTTTCCAGACACATTGATTGA
GCTGTTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis