Browse Element(s) Details


Os.9463.1.S1_at

Description gb:AK105585.1
DB_XREF= gi:32990794
TID=Os.9463.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9463 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-129-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-129-A01, full insert sequence.
FL= gb:AK105585.1 gb:AK072181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4805011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47990OsAffx.27915.1.S1_at4/1111+28382689..28382952hypothetical protein
LOC_Os11g48000OsAffx.19436.1.S1_at11/1111+28389298..28390942Zinc finger, C2H2 type family protein, expressed
LOC_Os11g48010OsAffx.19437.1.S1_at11/1111+28395006..28395278hypothetical protein
LOC_Os11g48020Os.9207.1.S1_at11/1111+28395918..28399184Sterol desaturase family protein, expressed
LOC_Os11g48030Os.51861.1.S1_at11/1111+28399907..28402478Skp1 family, tetramerisation domain containing protein, expressed
LOC_Os11g48040Os.1813.1.S1_at11/1111+28403341..28407097Mitochondrial carrier protein, expressed
LOC_Os11g48050Os.9463.1.S1_at11/1111+28407322..28409136expressed protein
LOC_Os11g48060Os.5982.1.S1_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48060OsAffx.31531.1.S1_s_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48064OsAffx.7448.1.S1_at11/1111+28423397..28423768hypothetical protein
LOC_Os11g48070Os.28457.1.S1_at10/1111+28424941..28427753GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g48080Os.36435.1.S1_at11/1111+28429443..28430701pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os11g48080Os.36435.2.S1_x_at6/1111+28429443..28430701pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os11g48090Os.19577.1.S2_at11/1111+28431429..28442894ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os11g48090Os.19577.1.S1_at10/1111+28431429..28442894ATP-dependent DNA helicase, RecQ family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9463.1.S1_at--1025--5211Chr11:28407848..28407872 (25 bp)
GAATTTCAGCGCCAGGTACTCTTCG
LOC_Os11g48050
Os.9463.1.S1_at--651--2911Chr11:28407796..28407820 (25 bp)
AAGGATGATTACTCCAACTCCATTG
LOC_Os11g48050
Os.9463.1.S1_at--117--6191Chr11:28407716..28407740 (25 bp)
GAGGACCTCACTTGGACTCTACTAC
LOC_Os11g48050
Os.9463.1.S1_at--114--4191Chr11:28407658..28407682 (25 bp)
CCGCCCTAAATCTCATCAATCAAAA
LOC_Os11g48050
Os.9463.1.S1_at--355--2211Chr11:28407584..28407608 (25 bp)
ACAACTCAACTGGTGATTGCCTCCA
LOC_Os11g48050
Os.9463.1.S1_at--785--1711Chr11:28407560..28407584 (25 bp)
ACCACGTACGGGTGCATTATACCTT
LOC_Os11g48050
Os.9463.1.S1_at--556--9851Chr11:28407527..28407551 (25 bp)
TACACTAGTACACCCTTTTGTTTAT
LOC_Os11g48050
Os.9463.1.S1_at--511--10791Chr11:28407510..28407534 (25 bp)
TTGTTTATTAATCTCCTCCAACCAC
LOC_Os11g48050
Os.9463.1.S1_at--107--3751Chr11:28407445..28407469 (25 bp)
CTCAAGCCTGTCTCATAATCTCATA
LOC_Os11g48050
Os.9463.1.S1_at--496--631Chr11:28407421..28407445 (25 bp)
ATGCTTCAAATCAGCCATGTGTTGG
LOC_Os11g48050
Os.9463.1.S1_at--60--4031Chr11:28407382..28407406 (25 bp)
CGCTTTTCCCTTCATCAGTTTGTAA
LOC_Os11g48050
Target Sequence 
GAATTTCAGCGCCAGGTACTCTTCGTCTTCCTCCTGCNGGTATCAGTTTCACAAGGATGATTACTCCAACTCCATTGCCA
ACAATTNTGGAGCTGGAGCTGGAAGCAGGCCTCCTCGTTCCTCCACCTTGCCGAGGACCTCACTTGGACTCTACTACTAC
TGAACTCAATTTTATTATTATTACCCTTAGCCGCCCTAAATCTCATCAATCAAAAATTATTAGTGTGCATAGCATAGCAG
CTTATATATACTTGTTGCAGTTTTACAACTCAACTGGTGATTGCCTCCACCACGTACGGGTGCATTATACCTTACTTAAT
TTACACTAGTACACCCTTTTGTTTATTAATCTCCTCCAACCACGACATATGCATGTTTCTTCTTTCATCCATTCAGTCCC
AGACTCAAGCCTGTCTCATAATCTCATATGCTTCAAATCAGCCATGTGTTGGATTGAAAAGAAAAACGCTTTTCCCTTCA
TCAGTTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9463.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis