Browse Element(s) Details


Os.36435.1.S1_at

Description gb:AK063409.1
DB_XREF= gi:32973427
TID=Os.36435.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36435 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putativeethylene-responsive protein (B1151A10.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-A12, full insert sequence.
FL= gb:AK063409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4808011/11pyridoxin biosynthesis protein ER1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g48040Os.1813.1.S1_at11/1111+28403341..28407097Mitochondrial carrier protein, expressed
LOC_Os11g48050Os.9463.1.S1_at11/1111+28407322..28409136expressed protein
LOC_Os11g48060Os.5982.1.S1_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48060OsAffx.31531.1.S1_s_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48064OsAffx.7448.1.S1_at11/1111+28423397..28423768hypothetical protein
LOC_Os11g48070Os.28457.1.S1_at10/1111+28424941..28427753GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g48080Os.36435.1.S1_at11/1111+28429443..28430701pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os11g48080Os.36435.2.S1_x_at6/1111+28429443..28430701pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os11g48090Os.19577.1.S2_at11/1111+28431429..28442894ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os11g48090Os.19577.1.S1_at10/1111+28431429..28442894ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os11g48100NANA11+28448396..28448845hypothetical protein
LOC_Os11g48110Os.27728.1.S1_at2/1111+28454487..28456741Phenylalanine ammonia-lyase, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0008615biological_processpyridoxine biosynthesis
GO:0009723biological_processresponse to ethylene stimulus
GO:0042819biological_processvitamin B6 biosynthesis
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0012505cellular_componentendomembrane system
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36435.1.S1_at--261--3331Chr11:28430328..28430352 (25 bp)
CACTACAGCGATCCGGAGATCCTCG
LOC_Os11g48080
Os.36435.1.S1_at--208--5851Chr11:28430402..28430426 (25 bp)
GACCAAAATGTCGAGCGCTACGCCG
LOC_Os11g48080
Os.36435.1.S1_at--768--1591Chr11:28430486..28430510 (25 bp)
AGCTCCGCACCGGTGGATGGTGAAT
LOC_Os11g48080
Os.36435.1.S1_at--545--9011Chr11:28430512..28430536 (25 bp)
TGAATCAACAATCGTCTTCTCTCAC
LOC_Os11g48080
Os.36435.1.S1_at--473--3051Chr11:28430521..28430545 (25 bp)
AATCGTCTTCTCTCACTAATTTTCT
LOC_Os11g48080
Os.36435.1.S1_at--601--3131Chr11:28430538..28430562 (25 bp)
AATTTTCTCCTCACAATGGACTGGA
LOC_Os11g48080
Os.36435.1.S1_at--590--51Chr11:28430572..28430596 (25 bp)
ATTGTTGCTGCCATTATTATTAGTT
LOC_Os11g48080
Os.36435.1.S1_at--794--151Chr11:28430598..28430622 (25 bp)
ATTAGTTTCTCCTCATTGCTACTGG
LOC_Os11g48080
Os.36435.1.S1_at--296--3171Chr11:28430632..28430656 (25 bp)
AATTGGCAATAGCACTTCTCTACTG
LOC_Os11g48080
Os.36435.1.S1_at--785--1971Chr11:28430665..28430689 (25 bp)
ACTCATTACCATGCCAAATTGCCTT
LOC_Os11g48080
Os.36435.1.S1_at--666--4391Chr11:28430677..28430701 (25 bp)
GCCAAATTGCCTTCAAGTTTTGTTG
LOC_Os11g48080
Target Sequence 
CACTACAGCGATCCGGAGATCCTCGCCGACGTCAGCGCTGGCCTCGGGGACGCCATGTCGGCATCAACCTCAACGACCAA
AATGTCGAGCGCTACGCCGCCCGCTCCCACTGAGCAGCTCCTGCTCCTGCTCCTGCTCCCTCTCTCCTCTTCTCTCTCAG
CTCCGCACCGGTGGATGGTGAATGTGAATCAACAATCGTCTTCTCTCACTAATTTTCTCCTCACAATGGACTGGAGAATG
GATGATTGTTGCTGCCATTATTATTAGTTGATTAGTTTCTCCTCATTGCTACTGGAGTACTACTAATTGGCAATAGCACT
TCTCTACTGCCGCCACCACTCATTACCATGCCAAATTGCCTTCAAGTTTTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36435.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis