Browse Element(s) Details


OsAffx.7448.1.S1_at

Description tigr:9639.m04504
TID=OsAffx.7448.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4806411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g48020Os.9207.1.S1_at11/1111+28395918..28399184Sterol desaturase family protein, expressed
LOC_Os11g48030Os.51861.1.S1_at11/1111+28399907..28402478Skp1 family, tetramerisation domain containing protein, expressed
LOC_Os11g48040Os.1813.1.S1_at11/1111+28403341..28407097Mitochondrial carrier protein, expressed
LOC_Os11g48050Os.9463.1.S1_at11/1111+28407322..28409136expressed protein
LOC_Os11g48060Os.5982.1.S1_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48060OsAffx.31531.1.S1_s_at11/1111+28415610..28418331Multicopper oxidase family protein, expressed
LOC_Os11g48064OsAffx.7448.1.S1_at11/1111+28423397..28423768hypothetical protein
LOC_Os11g48070Os.28457.1.S1_at10/1111+28424941..28427753GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os11g48080Os.36435.1.S1_at11/1111+28429443..28430701pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os11g48080Os.36435.2.S1_x_at6/1111+28429443..28430701pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os11g48090Os.19577.1.S2_at11/1111+28431429..28442894ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os11g48090Os.19577.1.S1_at10/1111+28431429..28442894ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os11g48100NANA11+28448396..28448845hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7448.1.S1_at--1123--1951Chr11:28423707..28423731 (25 bp)
ACTGTTGTTCAGATGGCGACGGGTT
LOC_Os11g48064
OsAffx.7448.1.S1_at--709--8791Chr11:28423702..28423726 (25 bp)
TGTTCAGATGGCGACGGGTTGATCT
LOC_Os11g48064
OsAffx.7448.1.S1_at--626--8851Chr11:28423683..28423707 (25 bp)
TGATCTGGCATGAGGGAGGCACAAC
LOC_Os11g48064
OsAffx.7448.1.S1_at--887--931Chr11:28423667..28423691 (25 bp)
AGGCACAACGCCGACACGAGATAGC
LOC_Os11g48064
OsAffx.7448.1.S1_at--1068--9031Chr11:28423637..28423661 (25 bp)
TGCAGCTGCGTCCTTCCAACAAGAG
LOC_Os11g48064
OsAffx.7448.1.S1_at--912--5251Chr11:28423528..28423552 (25 bp)
GAATCCATATCTGCTAATGCTCACC
LOC_Os11g48064
OsAffx.7448.1.S1_at--962--10631Chr11:28423500..28423524 (25 bp)
TTCCCTGTCGACACCATCTGGATCT
LOC_Os11g48064
OsAffx.7448.1.S1_at--61--5651Chr11:28423491..28423515 (25 bp)
GACACCATCTGGATCTGACCGTGGA
LOC_Os11g48064
OsAffx.7448.1.S1_at--510--471Chr11:28423479..28423503 (25 bp)
ATCTGACCGTGGAGGTTCGGGCACT
LOC_Os11g48064
OsAffx.7448.1.S1_at--1016--6151Chr11:28423468..28423492 (25 bp)
GAGGTTCGGGCACTCTGTTGCCAAC
LOC_Os11g48064
OsAffx.7448.1.S1_at--865--9751Chr11:28423433..28423457 (25 bp)
TAATGCAGCCCTAGCCACCGATGTC
LOC_Os11g48064
Target Sequence 
ACTGTTGTTCAGATGGCGACGGGTTGATCTGGCATGAGGGAGGCACAACGCCGACACGAGATAGCGGCGGTGCAGCTGCG
TCCTTCCAACAAGAGGAATCCATATCTGCTAATGCTCACCTCCTTCCCTGTCGACACCATCTGGATCTGACCGTGGAGGT
TCGGGCACTCTGTTGCCAACCACCTTCCACTAATGCAGCCCTAGCCACCGATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis