Browse Element(s) Details


OsAffx.19451.3.S1_s_at

Description tigr:9630.m01212
TID=OsAffx.19451.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1319011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13150Os.8408.1.S1_at11/112+7006064..7010650Pollen-specific protein SF21, putative, expressed
LOC_Os02g13160Os.19456.1.S1_x_at7/112+7012780..7014847F-box family protein, putative
LOC_Os02g13160Os.19456.1.S1_at7/112+7012780..7014847F-box family protein, putative
LOC_Os02g13160Os.3246.2.S1_at2/112+7012780..7014847F-box family protein, putative
LOC_Os02g13170Os.17268.1.S1_at10/112+7016805..7024340Mitochondrial carrier protein, expressed
LOC_Os02g13180NANA2+7024790..7025386Skp1 family, dimerisation domain containing protein, expressed
LOC_Os02g13190OsAffx.19451.3.S1_s_at11/112+7026620..7028304expressed protein
LOC_Os02g13190OsAffx.19451.3.S1_x_at11/112+7026620..7028304expressed protein
LOC_Os02g13190OsAffx.24480.1.S1_x_at1/112+7026620..7028304expressed protein
LOC_Os02g13200Os.5171.1.S1_at10/112+7032348..7034839expressed protein
LOC_Os02g13210OsAffx.32083.1.S1_x_at8/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.3.S1_x_at8/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.1.S1_at6/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.4.S1_x_at3/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13210OsAffx.32083.2.S1_x_at1/112+7039049..7042945Transposable element protein, putative, Transposase_24
LOC_Os02g13220OsAffx.19451.4.S1_x_at11/112+7044795..7046102expressed protein
LOC_Os02g13220OsAffx.19451.5.S1_x_at3/112+7044795..7046102expressed protein
LOC_Os02g13230OsAffx.7362.1.S1_x_at1/112+7050459..7051274transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19451.3.S1_s_at--1125--3731Chr02:7026990..7027014 (25 bp)
CTCAGGCAGTTCAGGGCGATGGCCT
LOC_Os02g13190
OsAffx.19451.3.S1_s_at--853--9631Chr02:7026989..7027013 (25 bp)
TCAGGCAGTTCAGGGCGATGGCCTC
LOC_Os02g13190
OsAffx.19451.3.S1_s_at--792--10131Chr02:7026909..7026933 (25 bp)
TATCCGTTAATTAATCCAGTGTAAT
LOC_Os02g13190
OsAffx.19451.3.S1_s_at--700--6751Chr02:7026904..7026928 (25 bp)
GTTAATTAATCCAGTGTAATCTAGT
LOC_Os02g13190
OsAffx.19451.3.S1_s_at--1086--2631Chr02:7026897..7026921 (25 bp)
AATCCAGTGTAATCTAGTTAATTAA
LOC_Os02g13190
OsAffx.19451.3.S1_s_at--460--3671Chr02:7026823..7026847 (25 bp)
CTAGCTGGAGGGAAACTATTTTTAT
LOC_Os02g13190
OsAffx.19451.3.S1_s_at--1097--10352Chr10:8885927..8885946 (20 bp)
TTTTATTTTTATCCCTCGAGTAGAT
NONE
OsAffx.19451.3.S1_s_at--604--10171Chr02:7026801..7026825 (25 bp)
TATTTTTATCCCTCGAGTAGATGTA
LOC_Os02g13190
OsAffx.19451.3.S1_s_at--368--10371Chr02:7026799..7026823 (25 bp)
TTTTTATCCCTCGAGTAGATGTAAT
LOC_Os02g13190
OsAffx.19451.3.S1_s_at--30--10431Chr02:7026796..7026820 (25 bp)
TTATCCCTCGAGTAGATGTAATTTT
LOC_Os02g13190
OsAffx.19451.3.S1_s_at--900--9311Chr02:7026793..7026817 (25 bp)
TCCCTCGAGTAGATGTAATTTTATT
LOC_Os02g13190
Target Sequence 
CTCAGGCAGTTCAGGGCGATGGCCTCGCCGGCGGTCAAGGACGAGGACATCAGGGAATTTGCCGGCAAATTGGTCTAGAT
ATATCCGTTAATTAATCCAGTGTAATCTAGTTAATTAATTAGCTGTATAGTATAGCACGCTATAGTCTAAGTGTCCATCT
GAGGAGCCTAGCTGGAGGGAAACTATTTTTATTTTTATCCCTCGAGTAGATGTAATTTTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19451.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis