Browse Element(s) Details


OsAffx.19478.1.S1_at

Description tigr:9639.m00327
TID=OsAffx.19478.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=major facilitator superfamily antiporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0415011/11major facilitator superfamily antiporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04090NANA11+1654934..1655377retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g04104Os.18177.1.S1_at11/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04104Os.9752.2.S1_x_at7/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04104Os.9752.3.S1_x_at6/1111+1656866..1667105transporter, putative, expressed
LOC_Os11g04120OsAffx.30808.1.S1_at11/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.30808.1.S1_x_at11/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.30808.2.S1_x_at2/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.23391.1.S1_at1/1111+1669896..1671817hypothetical protein
LOC_Os11g04120OsAffx.27782.1.S1_at1/1111+1669896..1671817hypothetical protein
LOC_Os11g04130OsAffx.30809.1.S1_x_at11/1111+1673387..1673715nodulin MtN21 family protein, putative
LOC_Os11g04140Os.53105.1.S1_at6/1111+1676806..1678456Integral membrane protein DUF6 containing protein
LOC_Os11g04150OsAffx.19478.1.S1_at11/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_s_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04150OsAffx.19478.2.S1_at9/1111+1680121..1687100major facilitator superfamily antiporter, putative, expressed
LOC_Os11g04160Os.53234.1.S1_at3/1111+1688435..16903414'-phosphopantetheinyl transferase superfamily protein
LOC_Os11g04170Os.49766.1.S1_at11/1111+1690862..1693286Calcium-dependent protein kinase, isoform 2, putative, expressed
LOC_Os11g04174Os.7704.1.S1_at10/1111+1693474..1695093expressed protein
LOC_Os11g04180Os.13586.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g04180Os.11628.1.S1_at11/1111+1695431..1698161Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os11g04190Os.50938.1.S1_at11/1111+1701229..1704478Auxin Efflux Carrier family protein, expressed
LOC_Os11g04200Os.54231.1.S1_at4/1111+1706762..1711766Mpp10 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19478.1.S1_at--281--7511Chr11:1681498..1681520 (23 bp)
GTGGTTACTATCAATACATGCTCTT
LOC_Os11g04150
OsAffx.19478.1.S1_at--279--2111Chr11:1681483..1681507 (25 bp)
ACATGCTCTTTCATTCTTCAGAACA
LOC_Os11g04150
OsAffx.19478.1.S1_at--393--2551Chr11:1681371..1681483 (25 bp)
AACTCTGTGCCCCAGCATCAAAGAG
LOC_Os11g04150
OsAffx.19478.1.S1_at--577--5951Chr11:1681349..1681373 (25 bp)
GAGCAACCGCAAATGGCTTAGCCAC
LOC_Os11g04150
OsAffx.19478.1.S1_at--872--9211Chr11:1681296..1681318 (23 bp)
TCCAGCAGGAGCAGGCATTCTGTTT
LOC_Os11g04150
OsAffx.19478.1.S1_at--308--10551Chr11:1680273..1680620 (25 bp)
TTCTTTCCAGGTGACCAAATGGTGT
LOC_Os11g04150
OsAffx.19478.1.S1_at--30--5232Chr12:1634066..1634090 (25 bp)
GAATTTTTGGAACTCATTTGGACCT
NONE
OsAffx.19478.1.S1_at--105--10831Chr11:1680211..1680235 (25 bp)
TTGGACCTTCAAACCATTTCTGGCC
LOC_Os11g04150
OsAffx.19478.1.S1_at--1049--8451Chr11:1680191..1680215 (25 bp)
TGGCCGTGCCATAGTAATTCTCTTC
LOC_Os11g04150
OsAffx.19478.1.S1_at--283--7071Chr11:1680178..1680202 (25 bp)
GTAATTCTCTTCAACCCCAAGTAAT
LOC_Os11g04150
OsAffx.19478.1.S1_at--685--7071Chr11:1680158..1680182 (25 bp)
GTAATTAAGCTTTCAGATCATCGAT
LOC_Os11g04150
Target Sequence 
GTGGTTACTATCAATACATGCTCTTTCATTCTTCAGAACAACTCTGTGCCCCAGCATCAAAGAGCAACCGCAAATGGCTT
AGCCACCACTTTAATGTCCTTCTTCAAGGCATTTGCTCCAGCAGGAGCAGGCATTCTGTTTTCGTGGGCACAAAAACGCC
AACATGCATTTTTCTTTCCAGGTGACCAAATGGTGTTCTTCATTTTGATTATTATTGAATTTTTGGAACTCATTTGGACC
TTCAAACCATTTCTGGCCGTGCCATAGTAATTCTCTTCAACCCCAAGTAATTAAGCTTTCAGATCATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19478.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis