Browse Element(s) Details


OsAffx.19494.1.S1_at

Description tigr:9640.m00374
TID=OsAffx.19494.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=calmodulin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0477011/11EF hand family protein
LOC_Os12g045605/11Calmodulin, putative
LOC_Os12g045805/11Calmodulin-related protein 97A, putative
LOC_Os08g343601/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04710Os.23206.1.S1_at10/1111+2002827..2005916Cytochrome P450 family protein, expressed
LOC_Os11g04720Os.37430.1.S1_at11/1111+2009238..2011255Two-component response regulator ARR8, putative, expressed
LOC_Os11g04730Os.9249.1.S1_at9/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04730Os.37965.1.S1_at1/1111+2011275..2013681RNA polymerase Rpb5, N-terminal domain containing protein, expressed
LOC_Os11g04740Os.18691.1.S1_at11/1111+2015624..2020065L-galactono-1,4-lactone dehydrogenase, putative, expressed
LOC_Os11g04750OsAffx.19491.1.S1_at11/1111+2020289..2021508hypothetical protein
LOC_Os11g04760OsAffx.30819.1.S1_at10/1111+2023666..2024973hypothetical protein
LOC_Os11g04770OsAffx.19494.1.S1_at11/1111+2025739..2026179EF hand family protein
LOC_Os11g04780NANA11+2033347..2034735retrotransposon protein, putative, unclassified
LOC_Os11g04790Os.27542.1.A1_at4/1111+2040146..2040911hypothetical protein
LOC_Os11g04800OsAffx.6995.1.S1_at11/1111+2042101..2046090hypothetical protein
LOC_Os11g04810NANA11+2047396..2047785hypothetical protein
LOC_Os11g04820NANA11+2050147..2050502EF hand family protein

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Gene Ontology Classification
GO idTypeName
GO:0006109biological_processregulation of carbohydrate metabolism
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0008610biological_processlipid biosynthesis
GO:0009744biological_processresponse to sucrose stimulus
GO:0009887biological_processorgan morphogenesis
GO:0019432biological_processtriacylglycerol biosynthesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19494.1.S1_at--502--4293Chr12:1932390..1932414 (25 bp)
CCTCTGAATTTTCTTCTCTGTGACA
NONE
OsAffx.19494.1.S1_at--279--3132Chr12:1932396..1932420 (25 bp)
AATTTTCTTCTCTGTGACAAGCACA
NONE
OsAffx.19494.1.S1_at--904--2212Chr12:1932412..1932436 (25 bp)
ACAAGCACAACACACACAGCACATG
NONE
OsAffx.19494.1.S1_at--803--1492Chr12:1932429..1932453 (25 bp)
AGCACATGCCCATCTGAACATTCTG
NONE
OsAffx.19494.1.S1_at--315--4555Chr12:1932436..1932460 (25 bp)
GCCCATCTGAACATTCTGAAACCAA
NONE
OsAffx.19494.1.S1_at--658--1432Chr12:1932465..1932489 (25 bp)
AGAACAGAGCTCACGCATGGCGATG
NONE
OsAffx.19494.1.S1_at--50--1494Chr12:1938844..1938868 (25 bp)
AGCAAGCGAGCTGGGAAGAACTAGA
NONE
OsAffx.19494.1.S1_at--333--6173Chr12:1936417..1936441 (25 bp)
GAGGAAGCTTTCAGCGTGTTCGACG
LOC_Os12g04580
OsAffx.19494.1.S1_at--96--1953Chr12:1936445..1936469 (25 bp)
ACGGCGATGGATTCATAAGTCCCCT
LOC_Os12g04580
OsAffx.19494.1.S1_at--637--10533Chr12:1936456..1936480 (25 bp)
TTCATAAGTCCCCTGGAGCTGCAGA
LOC_Os12g04580
OsAffx.19494.1.S1_at--560--5273Chr12:1936535..1936559 (25 bp)
GAATGCTCAAGGTTTTCGACAGAGA
LOC_Os12g04580
Target Sequence 
CCTCTGAATTTTCTTCTCTGTGACAAGCACAACACACACAGCACATGCCCATCTGAACATTCTGAAACCAAAGCAAGAAC
AGAGCTCACGCATGGCGATGTCNNNGNNGNANTNNNNNNNNNNNNNNNNNGNNNNNNNGNNGAGNGNNNCNNGGTAGAGG
ATGAAGCTCTTGTACTATTNGAAGAGAAGCAAGCGAGCTGGGAAGAACTAGAGGAAGCTTTCAGCGTGTTCGACGGCGAC
GGCGATGGATTCATAAGTCCCCTGGAGCTGCAGANTGTGATGAGAAGGTTGNGTTTGCAGCNNGANGCTGGCCATGAGGA
GTGTGANAGAATGCTCAAGGTTTTCGACAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis