Browse Element(s) Details


OsAffx.19517.2.S1_at

Description tigr:9639.m00496
TID=OsAffx.19517.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0578011/11uncharacterized plant-specific domain TIGR01568 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05760Os.53800.1.S1_at11/1111+2636539..2642204Serine carboxypeptidase S28 family protein, expressed
LOC_Os11g05760Os.53962.1.S1_at1/1111+2636539..2642204Serine carboxypeptidase S28 family protein, expressed
LOC_Os11g05770Os.54938.1.S1_at11/1111+2654947..2656312uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os11g05780OsAffx.19517.2.S1_at11/1111+2661590..2662318uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os11g05790OsAffx.24994.1.S1_at11/1111+2673472..2675730hypothetical protein
LOC_Os11g05790OsAffx.24994.2.S1_s_at11/1111+2673472..2675730hypothetical protein
LOC_Os11g05800OsAffx.30833.1.S1_at10/1111+2678664..2683254TB2/DP1, HVA22 family protein, expressed
LOC_Os11g05810Os.6844.1.S1_at11/1111+2683848..2684983expressed protein
LOC_Os11g05810Os.6844.1.S1_x_at10/1111+2683848..2684983expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19517.2.S1_at--1057--1671Chr11:2662165..2662189 (25 bp)
AGCCTCGCGTCGTTCATCTGGCCGT
LOC_Os11g05780
OsAffx.19517.2.S1_at--1140--9371Chr11:2662138..2662162 (25 bp)
TCGATGTCGTCCGCGTGCAAGCAGG
LOC_Os11g05780
OsAffx.19517.2.S1_at--166--8371Chr11:2662097..2662121 (25 bp)
GGCGGTGCCGGCGAGAGTTGGCGGC
LOC_Os11g05780
OsAffx.19517.2.S1_at--191--7711Chr11:2662069..2662093 (25 bp)
GGGTCGAAATCGAAATCGTCGCCGT
LOC_Os11g05780
OsAffx.19517.2.S1_at--1152--7211Chr11:2662067..2662091 (25 bp)
GTCGAAATCGAAATCGTCGCCGTAC
LOC_Os11g05780
OsAffx.19517.2.S1_at--80--5591Chr11:2662064..2662088 (25 bp)
GAAATCGAAATCGTCGCCGTACTAC
LOC_Os11g05780
OsAffx.19517.2.S1_at--91--3051Chr11:2662062..2662086 (25 bp)
AATCGAAATCGTCGCCGTACTACTT
LOC_Os11g05780
OsAffx.19517.2.S1_at--6--5591Chr11:2662058..2662082 (25 bp)
GAAATCGTCGCCGTACTACTTCCGG
LOC_Os11g05780
OsAffx.19517.2.S1_at--1110--471Chr11:2662055..2662079 (25 bp)
ATCGTCGCCGTACTACTTCCGGTCG
LOC_Os11g05780
OsAffx.19517.2.S1_at--730--4592Chr08:22425941..22426063 (24 bp)
GCGAAGTCGCCGAGCAGGAGGAAGA
NONE
OsAffx.19517.2.S1_at--822--7571Chr11:2661733..2661757 (25 bp)
GGGCTCTGCCATTGGGACGACCTCC
LOC_Os11g05780
Target Sequence 
AGCCTCGCGTCGTTCATCTGGCCGTCGTCGATGTCGTCCGCGTGCAAGCAGGCGGCGGCGGCTGCGGTGGCGGTGCCGGC
GAGAGTTGGCGGCGGGGGGTCGAAATCGAAATCGTCGCCGTACTACTTCCGGTCGTCGTCCTCCGCCGCGTCGTTCTCCT
CCTCCTCGGCCGCCACCACCTACAGCACCGCCAGCTACTACTCCTCCTCCCGCGGCGGCGGCGGCGGCGCCAAGAAGAAG
AAACAGGAGGAAGAGCCGCCGTACCTTGCGCCGCCCAAGGGCAAGGCGGCGGCGAAGTCGCCGAGCAGGAGGAAGAAGAA
GACGGCGGAGGAGGACGACGGCGGCGGCGGCGTCGGGGTGGCGGTGGAGAAGGAGTCGTCGGACCCGCGCGCCGACTTCC
GGGAGAGCATGGTGCAGATGGTGGTGGAGATGGGGCTCTGCCATTGGGACGACCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19517.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis