Browse Element(s) Details


OsAffx.30833.1.S1_at

Description tigr:9639.m00498
TID=OsAffx.30833.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=TB2DP1, HVA22 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0580010/11TB2/DP1, HVA22 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05770Os.54938.1.S1_at11/1111+2654947..2656312uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os11g05780OsAffx.19517.2.S1_at11/1111+2661590..2662318uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os11g05790OsAffx.24994.1.S1_at11/1111+2673472..2675730hypothetical protein
LOC_Os11g05790OsAffx.24994.2.S1_s_at11/1111+2673472..2675730hypothetical protein
LOC_Os11g05800OsAffx.30833.1.S1_at10/1111+2678664..2683254TB2/DP1, HVA22 family protein, expressed
LOC_Os11g05810Os.6844.1.S1_at11/1111+2683848..2684983expressed protein
LOC_Os11g05810Os.6844.1.S1_x_at10/1111+2683848..2684983expressed protein
LOC_Os11g05820Os.55076.1.S1_at11/1111+2692655..2695608transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g05820OsAffx.6089.1.S1_at1/1111+2692655..2695608transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g05830OsAffx.18695.1.S1_at11/1111+2704004..2704342hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30833.1.S1_at--56--4912Chr12:2927391..2927591 (25 bp)
GCTTCTGGTGCCAGTACTGGATCAT
NONE
OsAffx.30833.1.S1_at--982--10071Chr11:2680257..2680281 (25 bp)
TAGTGTCCATGGTGATAGCTTGTGA
LOC_Os11g05800
OsAffx.30833.1.S1_at--1022--7371Chr11:2680278..2680392 (25 bp)
GTGAGAGCTTCGTCTCATGGATGCC
LOC_Os11g05800
OsAffx.30833.1.S1_at--138--10551Chr11:2680615..2680639 (25 bp)
TTCATTCGGCCTACAGTGATGCAAT
LOC_Os11g05800
OsAffx.30833.1.S1_at--689--4971Chr11:2680668..2680692 (25 bp)
GCATCTTAGAGCTAACTCTGGCCAG
LOC_Os11g05800
OsAffx.30833.1.S1_at--1113--1991Chr11:2680682..2680706 (25 bp)
ACTCTGGCCAGCTGATAGCATTCTA
LOC_Os11g05800
OsAffx.30833.1.S1_at--503--3231Chr11:2680710..2680734 (25 bp)
CAAGAACTTCGCTGACAAAGGGACA
LOC_Os11g05800
OsAffx.30833.1.S1_at--844--4271Chr11:2680752..2680776 (25 bp)
CCTGCGCTATGTTGTTTCTGAAAGA
LOC_Os11g05800
OsAffx.30833.1.S1_at--695--5051NONE
GCAGCAAATTCAGAGCCGCAGAGGA
NONE
OsAffx.30833.1.S1_at--476--5011Chr11:2683061..2683085 (25 bp)
GCAGTTGGTCGAGTTGGAACCCCTT
LOC_Os11g05800
OsAffx.30833.1.S1_at--176--5852Chr11:2683168..2683192 (25 bp)
GAGCCACCGGCCATTGCTGACGTTT
LOC_Os11g05800
Target Sequence 
GCTTCTGGTGCCAGTACTGGATCATAGTGTCCATGGTGATAGCTTGTGAGAGCTTCGTCTCATGGATGCCAATGTATGGA
GAAATTAAGCTAGCTTTCTTTGTTTATCTGTGGTATCCCAAAACGAAGGGCAGTGATGTGGTGTATGACTCCTTCATTCG
GCCTACAGTGATGCAATACGAACCAAATATTGAGCAGAGGCTTGAGCATCTTAGAGCTAACTCTGGCCAGCTGATAGCAT
TCTACATCAAGAACTTCGCTGACAAAGGGACAGCTTTCTTCATGGACTTCCTGCGCTATGTTGTTTCTGAAAGACCTGAA
GCAGCAGCAAATTCAGAGCCGCAGAGGAGCAGTTGGTCGAGTTGGAACCCCTTCGCCAGCCGCCGGCAGGAGCCATCTCC
GCCGCCGTCGGCGCCGCCGCGGGAGCGCAGGTTCAGCGGCGCCGACCCCGACGACGAGCCACCGGCCATTGCTGACGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis