Browse Element(s) Details


OsAffx.18695.1.S1_at

Description tigr:9639.m00501
TID=OsAffx.18695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0583011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05800OsAffx.30833.1.S1_at10/1111+2678664..2683254TB2/DP1, HVA22 family protein, expressed
LOC_Os11g05810Os.6844.1.S1_at11/1111+2683848..2684983expressed protein
LOC_Os11g05810Os.6844.1.S1_x_at10/1111+2683848..2684983expressed protein
LOC_Os11g05820Os.55076.1.S1_at11/1111+2692655..2695608transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g05820OsAffx.6089.1.S1_at1/1111+2692655..2695608transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g05830OsAffx.18695.1.S1_at11/1111+2704004..2704342hypothetical protein
LOC_Os11g05840OsAffx.30834.1.S1_at11/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.30834.1.S1_x_at11/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840Os.46785.2.S1_x_at3/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.30226.2.S1_x_at2/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.5278.1.S1_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.10573.1.S1_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05840OsAffx.442.1.S1_x_at1/1111+2709134..2720179retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g05850Os.11817.1.S1_a_at11/1111+2726047..2732547cyclin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18695.1.S1_at--280--1171Chr11:2704078..2704102 (25 bp)
AGTCAACGCCACTCCAGAGGTCGAT
LOC_Os11g05830
OsAffx.18695.1.S1_at--355--7791Chr11:2704096..2704120 (25 bp)
GGTCGATGGCGGCAAATCCGCCCCT
LOC_Os11g05830
OsAffx.18695.1.S1_at--1077--5071Chr11:2704124..2704148 (25 bp)
GCAGCCAGGGTAGTGGATCCACCTA
LOC_Os11g05830
OsAffx.18695.1.S1_at--553--7971Chr11:2704138..2704162 (25 bp)
GGATCCACCTATCCCAAAGATTGGG
LOC_Os11g05830
OsAffx.18695.1.S1_at--72--5531Chr11:2704169..2704193 (25 bp)
GAAACCGTAGCTCCCCAAGCCGATA
LOC_Os11g05830
OsAffx.18695.1.S1_at--209--2671Chr11:2704185..2704209 (25 bp)
AAGCCGATATCGTTGTCGTAGCCTC
LOC_Os11g05830
OsAffx.18695.1.S1_at--803--251Chr11:2704191..2704215 (25 bp)
ATATCGTTGTCGTAGCCTCCACTGT
LOC_Os11g05830
OsAffx.18695.1.S1_at--832--6611Chr11:2704196..2704220 (25 bp)
GTTGTCGTAGCCTCCACTGTTGCCA
LOC_Os11g05830
OsAffx.18695.1.S1_at--271--8451Chr11:2704252..2704276 (25 bp)
TGGCCGTTCCCGATCTTGCTGGTTG
LOC_Os11g05830
OsAffx.18695.1.S1_at--493--431Chr11:2704264..2704288 (25 bp)
ATCTTGCTGGTTGTCGGCCACTTCA
LOC_Os11g05830
OsAffx.18695.1.S1_at--180--551Chr11:2704288..2704312 (25 bp)
ATCCCGTCATCTACCGTTCGATGAG
LOC_Os11g05830
Target Sequence 
AGTCAACGCCACTCCAGAGGTCGATGGCGGCAAATCCGCCCCTCCCGCAGCCAGGGTAGTGGATCCACCTATCCCAAAGA
TTGGGGCGGCGGAAACCGTAGCTCCCCAAGCCGATATCGTTGTCGTAGCCTCCACTGTTGCCACCGGATCTGCTGCCGCC
GAGCTCCCCACCGCTGGCCGTTCCCGATCTTGCTGGTTGTCGGCCACTTCATCCCGTCATCTACCGTTCGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis