Browse Element(s) Details


OsAffx.19522.1.S1_at

Description tigr:9640.m00576
TID=OsAffx.19522.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GRAS family transcription factor, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0654011/11GRAS family transcription factor containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06510Os.9447.1.S1_at11/1112+3144036..3148570Calcineurin B-like protein 3, putative, expressed
LOC_Os12g06510OsAffx.23885.1.S1_s_at10/1112+3144036..3148570Calcineurin B-like protein 3, putative, expressed
LOC_Os12g06520OsAffx.19521.1.S1_at10/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06520Os.19640.1.S1_at10/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06520Os.53732.1.S1_a_at1/1112+3152108..3155798bZIP transcriptional activator RSG, putative, expressed
LOC_Os12g06530Os.46012.2.S1_x_at9/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06530Os.46012.3.S1_x_at6/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06530Os.27088.1.A1_x_at5/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06540OsAffx.19522.1.S1_at11/1112+3169550..3171222GRAS family transcription factor containing protein
LOC_Os12g06550Os.55421.1.S1_at11/1112+3174209..3177222expressed protein
LOC_Os12g06560OsAffx.31618.1.S1_at11/1112+3178993..3183721expressed protein
LOC_Os12g06570OsAffx.31619.1.S1_at11/1112+3185850..3189005Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os12g06580NANA12+3191370..3193178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06590NANA12+3194787..3195905retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19522.1.S1_at--700--1931Chr12:3170387..3170411 (25 bp)
ACGGCGGATGACCTCGACGTCCACG
LOC_Os12g06540
OsAffx.19522.1.S1_at--271--1091Chr12:3170433..3170457 (25 bp)
AGGGCGTCCAGTGGTCGTCGCTCAT
LOC_Os12g06540
OsAffx.19522.1.S1_at--397--9231Chr12:3170439..3170463 (25 bp)
TCCAGTGGTCGTCGCTCATGTCAGA
LOC_Os12g06540
OsAffx.19522.1.S1_at--111--8811Chr12:3170489..3170749 (25 bp)
TGTTCCACCTCACGGACGCTGAAGC
LOC_Os12g06540
OsAffx.19522.1.S1_at--1081--3291Chr12:3170769..3170793 (25 bp)
CACAATCCTTCAACCAAAGCTGGTG
LOC_Os12g06540
OsAffx.19522.1.S1_at--29--1711Chr12:3170781..3170805 (25 bp)
ACCAAAGCTGGTGATCCTGATCGAG
LOC_Os12g06540
OsAffx.19522.1.S1_at--218--1871Chr12:3170807..3170831 (25 bp)
ACGAGCTATCCCGAATCAGCAAGAA
LOC_Os12g06540
OsAffx.19522.1.S1_at--718--3971Chr12:3170888..3170912 (25 bp)
CGGTGGCCCACTTCACGGCGGTGAT
LOC_Os12g06540
OsAffx.19522.1.S1_at--125--5911Chr12:3170925..3170949 (25 bp)
GAGCTGCCTCGTGAGCTACGACGAC
LOC_Os12g06540
OsAffx.19522.1.S1_at--1113--1411Chr12:3171152..3171176 (25 bp)
AGAAAGGGAGGCTCGCTCTCTGCTG
LOC_Os12g06540
OsAffx.19522.1.S1_at--1099--9491Chr12:3171168..3171192 (25 bp)
TCTCTGCTGGAAGTCCAGGCCTTTG
LOC_Os12g06540
Target Sequence 
ACGGCGGATGACCTCGACGTCCACGTCGTCGACTTCAACGTCGGCGAGGGCGTCCAGTGGTCGTCGCTCATGTCAGACCT
CGCCGCCGCCGGCCGCCACCGCTGTTCCACCTCACGGACGCTGAAGCTTCTCCTCCTCGGCACGATCACAATCCTTCAAC
CAAAGCTGGTGATCCTGATCGAGGACGAGCTATCCCGAATCAGCAAGAACCCACCATCACCGTCCCTCGCCGCGCCGCCG
CCGTTCCCGGAGTTCTTCTCCGACGCGGTGGCCCACTTCACGGCGGTGATGGAGTCAACGGCGAGCTGCCTCGTGAGCTA
CGACGACGAGGCGTGGCTGAGCCTGAGGCGCGTGGGGGAGGAGGTGGTGGGGCCCAGGGTGGAGGACGCTGTGGGGAGGT
ATGGGTCACTGGCAGGTGGGGCCCAGATGATGGAAGGGCTCAGGGCTCGTGAGGTGAGCGGCTTCAGCGTTGCTCAGGGG
AAGATGTTGGCTGGGCTCTTCGGTGGAGGGTTTGGGGTTGTGCATCAGGAGAAAGGGAGGCTCGCTCTCTGCTGGAAGTC
CAGGCCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19522.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis