Browse Element(s) Details


OsAffx.19531.1.S1_at

Description tigr:9640.m00670
TID=OsAffx.19531.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0741011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07360OsAffx.19529.1.S1_at11/1112+3632980..3633929hypothetical protein
LOC_Os12g07380Os.49394.1.S1_at10/1112+3635453..3636402expressed protein
LOC_Os12g07390Os.26939.1.A1_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_s_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_at8/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.3740.3.S1_s_at1/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.12316.1.S1_at1/1112+3640688..3643981expressed protein
LOC_Os12g07400OsAffx.19530.1.S1_at11/1112+3649452..3650472hypothetical protein
LOC_Os12g07410OsAffx.19531.1.S1_at11/1112+3657273..3658295hypothetical protein
LOC_Os12g07420OsAffx.7512.1.S1_at11/1112+3661130..3661579hypothetical protein
LOC_Os12g07430OsAffx.31632.1.S1_at10/1112+3663522..3664234hypothetical protein
LOC_Os12g07430OsAffx.25932.1.S1_at6/1112+3663522..3664234hypothetical protein
LOC_Os12g07440OsAffx.7513.1.S1_at11/1112+3667705..3669772hypothetical protein
LOC_Os12g07450Os.11721.1.S1_at11/1112+3671806..3678298transducin family protein, putative, expressed
LOC_Os12g07460OsAffx.19532.1.S1_at11/1112+3681711..3682528hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19531.1.S1_at--233--2511Chr12:3657633..3657657 (25 bp)
AACATCAACCATCACTCTCGTAATG
LOC_Os12g07410
OsAffx.19531.1.S1_at--676--3751Chr12:3657649..3657673 (25 bp)
CTCGTAATGTGCTCCTCGGGTTTAA
LOC_Os12g07410
OsAffx.19531.1.S1_at--897--8771Chr12:3657661..3657685 (25 bp)
TCCTCGGGTTTAATCCTACTGGCAA
LOC_Os12g07410
OsAffx.19531.1.S1_at--625--3031Chr12:3657684..3657708 (25 bp)
AATCCCTTTCATGCTTACAACTTTG
LOC_Os12g07410
OsAffx.19531.1.S1_at--69--9391Chr12:3657732..3657756 (25 bp)
TCGATTCAGTACAGGAGGGCGCTTC
LOC_Os12g07410
OsAffx.19531.1.S1_at--843--1531Chr12:3657787..3657811 (25 bp)
AGCATGTCACTCAAACCCAGTTTAT
LOC_Os12g07410
OsAffx.19531.1.S1_at--833--10251Chr12:3657811..3657835 (25 bp)
TTTGTGAGGAGTCCCATTCCTATCT
LOC_Os12g07410
OsAffx.19531.1.S1_at--791--8271Chr12:3658070..3658094 (25 bp)
GGCATCCCGGCGAGCAAAGCAAACA
LOC_Os12g07410
OsAffx.19531.1.S1_at--203--9891Chr12:3658107..3658131 (25 bp)
TACTCTCGGTTTCAGTTGGGTGCTC
LOC_Os12g07410
OsAffx.19531.1.S1_at--238--10791Chr12:3658195..3658219 (25 bp)
TTGTTGATCTTCCTCCGGAGTACGA
LOC_Os12g07410
OsAffx.19531.1.S1_at--998--6071Chr12:3658212..3658236 (25 bp)
GAGTACGACTTCTTTGGTGGGTTTG
LOC_Os12g07410
Target Sequence 
AACATCAACCATCACTCTCGTAATGTGCTCCTCGGGTTTAATCCTACTGGCAATCCCTTTCATGCTTACAACTTTGTGTT
GGAGGAGATCCGCATGGCCTCGATTCAGTACAGGAGGGCGCTTCCTTTTGCCCCTCACCTGATGCGGATGATCGAGCATG
TCACTCAAACCCAGTTTATTTGTGAGGAGTCCCATTCCTATCTCACTCTGCGAGTGCCCAAGGCTTGCTCTGCGGCTCCT
GACATACCCACCTCATCCTCTTGGCCGCCTACTCGGGACATCCCGTCTTCCTCCACTCAGCCTCCTCCTGAGCAGGCCAA
ACAGAATCGCAGGGCGCGAAACAAAATCAAGAAGGCATCCCGGCGAGCAAAGCAAACACAGGCGCACCTCTACTCTCGGT
TTCAGTTGGGTGCTCCACCGTCCCCACCAGGCTATGAGGCTGAGCCCGATGGGCCTGAGGATGACATCGAGGATCCCTTT
GTTGATCTTCCTCCGGAGTACGACTTCTTTGGTGGGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19531.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis