Browse Element(s) Details


OsAffx.1955.1.S1_x_at

Description tigr:9629.m00683
TID=OsAffx.1955.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0751011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07490Os.18584.1.S1_at11/111+3556534..3571082RST1, putative, expressed
LOC_Os01g07500Os.37066.1.S1_at11/111+3574275..3578661Allinase, C-terminal domain containing protein, expressed
LOC_Os01g07510OsAffx.1955.1.S1_at11/111+3584410..3584640hypothetical protein
LOC_Os01g07510OsAffx.1955.1.S1_x_at11/111+3584410..3584640hypothetical protein
LOC_Os01g07520Os.9383.1.S1_a_at11/111+3588629..3592954expressed protein
LOC_Os01g07520Os.9383.2.S1_x_at11/111+3588629..3592954expressed protein
LOC_Os01g07530Os.6418.1.S1_at11/111+3595253..3598662Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os01g07540OsAffx.1956.1.S1_at11/111+3606522..3610484D111/G-patch domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1955.1.S1_x_at--1138--9111Chr01:3584443..3584467 (25 bp)
TGCGGTGTTCCGAAGAAGGGACTCA
LOC_Os01g07510
OsAffx.1955.1.S1_x_at--125--7751Chr01:3584446..3584470 (25 bp)
GGTGTTCCGAAGAAGGGACTCAGAT
LOC_Os01g07510
OsAffx.1955.1.S1_x_at--244--8811Chr01:3584448..3584472 (25 bp)
TGTTCCGAAGAAGGGACTCAGATCC
LOC_Os01g07510
OsAffx.1955.1.S1_x_at--1143--2731Chr01:3584455..3584479 (25 bp)
AAGAAGGGACTCAGATCCCTCATCC
LOC_Os01g07510
OsAffx.1955.1.S1_x_at--6--2891Chr01:3584458..3584482 (25 bp)
AAGGGACTCAGATCCCTCATCCTGT
LOC_Os01g07510
OsAffx.1955.1.S1_x_at--485--5711Chr01:3584462..3584486 (25 bp)
GACTCAGATCCCTCATCCTGTTAGT
LOC_Os01g07510
OsAffx.1955.1.S1_x_at--275--9651Chr01:3584465..3584489 (25 bp)
TCAGATCCCTCATCCTGTTAGTTGT
LOC_Os01g07510
OsAffx.1955.1.S1_x_at--624--3433Chr05:26701177..26701200 (24 bp)
CAGATCCCTCATCCTGTTAGTTGTC
NONE
OsAffx.1955.1.S1_x_at--576--8211Chr01:3584510..3584534 (25 bp)
GGAATCGGAGGATCTATGACCATAA
LOC_Os01g07510
OsAffx.1955.1.S1_x_at--497--6032Chr01:3584536..3584560 (25 bp)
GAGATGGCAACGAGCTTCCTGCTAA
LOC_Os01g07510
OsAffx.1955.1.S1_x_at--884--6153Chr08:11026138..11026162 (25 bp)
GAGGTTGGCCTATGGGTTCTGGCAG
NONE
Target Sequence 
TGCGGTGTTCCGAAGAAGGGACTCAGATCCCTCATCCTGTTAGTTGTCTGGGAGATTTGGAAAGAGAGGAATCGGAGGAT
CTATGACCATAAAGAGATGGCAACGAGCTTCCTGCTAACAAAAATCAAAGAGGAGGTTGGCCTATGGGTTCTGGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1955.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis