Browse Element(s) Details


OsAffx.19624.1.S1_at

Description tigr:9640.m01170
TID=OsAffx.19624.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g122306/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12190OsAffx.7561.1.S1_at11/1112+6688496..6691362hypothetical protein
LOC_Os12g12200Os.47463.1.S1_x_at6/1112+6695684..6699381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12200Os.14491.2.S1_x_at5/1112+6695684..6699381transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12210NANA12+6702547..6705879transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12220OsAffx.19623.1.S1_x_at11/1112+6709871..6711004hypothetical protein
LOC_Os12g12230OsAffx.19624.1.S1_at6/1112+6714309..6716015expressed protein
LOC_Os12g12240Os.52242.1.S1_at1/1112+6719650..6723790transposon protein, putative, Mariner sub-class
LOC_Os12g12250OsAffx.31660.3.S1_x_at10/1112+6724378..6726039hypothetical protein
LOC_Os12g12250OsAffx.31660.2.S1_x_at6/1112+6724378..6726039hypothetical protein
LOC_Os12g12250OsAffx.31660.1.S1_at5/1112+6724378..6726039hypothetical protein
LOC_Os12g12260Os.51035.1.S1_at11/1112+6728591..6733242Diacylglycerol kinase 1, putative, expressed
LOC_Os12g12260OsAffx.31710.1.S1_x_at10/1112+6728591..6733242Diacylglycerol kinase 1, putative, expressed
LOC_Os12g12270Os.20602.2.S1_x_at11/1112+6734459..6736639hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19624.1.S1_at--61--3691Chr12:6714425..6714449 (25 bp)
CTTTGTCATGTCTCTTATGGTCATA
LOC_Os12g12230
OsAffx.19624.1.S1_at--992--811Chr12:6714441..6714465 (25 bp)
ATGGTCATAGCTATGGTTCTCTCTT
LOC_Os12g12230
OsAffx.19624.1.S1_at--424--831Chr12:6714453..6714477 (25 bp)
ATGGTTCTCTCTTCCTGCCAAGCAG
LOC_Os12g12230
OsAffx.19624.1.S1_at--735--9191NONE
TGCCAAGCAGCTATCCATTTCAACT
NONE
OsAffx.19624.1.S1_at--281--1571Chr12:6715695..6715719 (25 bp)
AGCTATCCATTTCAACTTGCACTGC
LOC_Os12g12230
OsAffx.19624.1.S1_at--480--191Chr12:6715703..6715727 (25 bp)
ATTTCAACTTGCACTGCGCCGACCT
LOC_Os12g12230
OsAffx.19624.1.S1_at--362--3012Chr12:6715748..6715772 (25 bp)
AATGCATGGCGGATTGCCACCGCAG
LOC_Os12g12230
OsAffx.19624.1.S1_at--239--4131NONE
CGCAGAGGTTTCCAGGATTATAAGA
NONE
OsAffx.19624.1.S1_at--852--1331Chr12:6716322..6716346 (25 bp)
AGAGATTACTAGGTCATACCCCGCG
NONE
OsAffx.19624.1.S1_at--496--10471Chr12:6716327..6716351 (25 bp)
TTACTAGGTCATACCCCGCGTTTTG
NONE
OsAffx.19624.1.S1_at--511--4211Chr12:6716342..6716366 (25 bp)
CCGCGTTTTGCTGCAGTATTCATGG
NONE
Target Sequence 
CTTTGTCATGTCTCTTATGGTCATAGCTATGGTTCTCTCTTCCTGCCAAGCAGCTATCCATTTCAACTTGCACTGCGCCG
ACCTGCCAAAATGCACTGAACATGAATGCATGGCGGATTGCCACCGCAGAGGTTTCCAGGATTATAAGAGATTACTAGGT
CATACCCCGCGTTTTGCTGCAGTATTCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis