Browse Element(s) Details


OsAffx.1963.1.S1_at

Description tigr:9629.m00852
TID=OsAffx.1963.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0909011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09050NANA1+4547914..4551442retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09060NANA1+4555808..4556752retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g09069OsAffx.21907.1.S1_at1/111+4560549..4560966NA
LOC_Os01g09080OsAffx.10978.1.S1_at11/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09080Os.3783.1.S1_x_at10/111+4563224..4565416WRKY DNA binding domain containing protein, expressed
LOC_Os01g09090OsAffx.1963.1.S1_at11/111+4568493..4569020hypothetical protein
LOC_Os01g09100Os.29979.1.S1_at11/111+4569367..4570211WRKY DNA binding domain containing protein, expressed
LOC_Os01g09110NANA1+4572514..4572957hypothetical protein
LOC_Os01g09120Os.26449.1.S1_at11/111+4578009..4581492PAS domain S-box family protein, expressed
LOC_Os01g09130OsAffx.1964.2.S1_s_at11/111+4583888..4584637hypothetical protein
LOC_Os01g09140OsAffx.1965.1.S1_at11/111+4587722..4588174hypothetical protein
LOC_Os01g09150OsAffx.10980.1.S1_at11/111+4592862..4593614hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1963.1.S1_at--462--2311Chr01:4568626..4568650 (25 bp)
AAAGGGTTCTTTCTGCTGGAAGCTT
LOC_Os01g09090
OsAffx.1963.1.S1_at--1148--1551Chr01:4568646..4568670 (25 bp)
AGCTTATCGTGGATGGGCAACGCCC
LOC_Os01g09090
OsAffx.1963.1.S1_at--98--4551Chr01:4568667..4568691 (25 bp)
GCCCTGCATGTGGAGGCGTTAGCAA
LOC_Os01g09090
OsAffx.1963.1.S1_at--280--2391Chr01:4568746..4568770 (25 bp)
AAACGGATGCACAGATGCTGGGCAA
LOC_Os01g09090
OsAffx.1963.1.S1_at--278--7611Chr01:4568765..4568789 (25 bp)
GGGCAAAGCACTTATTTCCCAAGAT
LOC_Os01g09090
OsAffx.1963.1.S1_at--490--2811Chr01:4568785..4568809 (25 bp)
AAGATCTGAACCGTCGCCCTGATGG
LOC_Os01g09090
OsAffx.1963.1.S1_at--48--6271Chr01:4568853..4568877 (25 bp)
GATGTCTTTTCTATTTCAGTTTTCC
LOC_Os01g09090
OsAffx.1963.1.S1_at--227--6811Chr01:4568871..4568895 (25 bp)
GTTTTCCCTAGATCTTGTAACAAAG
LOC_Os01g09090
OsAffx.1963.1.S1_at--716--3291Chr01:4568891..4568915 (25 bp)
CAAAGTGGCTGATTGTTTGGCCTCT
LOC_Os01g09090
OsAffx.1963.1.S1_at--396--7691Chr01:4568924..4568948 (25 bp)
GGGTATCGTGGCCACTAGCTCCAAG
LOC_Os01g09090
OsAffx.1963.1.S1_at--219--2832Chr01:4568946..4568970 (25 bp)
AAGTGTTTCTGGAGCCAAGCCCCGA
LOC_Os01g09090
Target Sequence 
AAAGGGTTCTTTCTGCTGGAAGCTTATCGTGGATGGGCAACGCCCTGCATGTGGAGGCGTTAGCAATGATGAAAAGTCTA
GAAAAAGTGTCTCAACAGGGGATGACAAAAATTGAGGTTAAAACGGATGCACAGATGCTGGGCAAAGCACTTATTTCCCA
AGATCTGAACCGTCGCCCTGATGGTGTCATTTTCAGAAAATTAAGGGCTTTCTTAAGATCAAACTTTGATGTCTTTTCTA
TTTCAGTTTTCCCTAGATCTTGTAACAAAGTGGCTGATTGTTTGGCCTCTTTTGGTGTGGGTATCGTGGCCACTAGCTCC
AAGTGTTTCTGGAGCCAAGCCCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis