Browse Element(s) Details


OsAffx.19640.1.S1_at

Description tigr:9640.m01268
TID=OsAffx.19640.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1314011/11hypothetical protein
LOC_Os05g326401/11expressed protein
LOC_Os07g047201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13110OsAffx.19639.1.S1_at11/1112+7286621..7289146pentatricopeptide, putative, expressed
LOC_Os12g13120Os.50753.1.S1_at11/1112+7290814..7298557histidine triad family protein, putative, expressed
LOC_Os12g13130Os.27233.1.S1_at10/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13130OsAffx.7575.3.S1_x_at9/1112+7304037..7308743zinc finger family protein, putative, expressed
LOC_Os12g13140OsAffx.19640.1.S1_at11/1112+7311928..7312826hypothetical protein
LOC_Os12g13150Os.50761.1.S1_at11/1112+7313271..7324855expressed protein
LOC_Os12g13160NANA12+7327780..7328511expressed protein
LOC_Os12g13170Os.2234.1.A1_a_at11/1112+7329479..7335516bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19640.1.S1_at--170--4371Chr12:7312067..7312091 (25 bp)
CCAAATCCGAAGCTCCCACGTTGAA
LOC_Os12g13140
OsAffx.19640.1.S1_at--1057--4051Chr12:7312098..7312122 (25 bp)
CGATGGCGGCGCAACAACAGCGTCG
LOC_Os12g13140
OsAffx.19640.1.S1_at--1003--9331Chr12:7312157..7312181 (25 bp)
TCGCGTGCCACCTCGCTAGGAATGA
LOC_Os12g13140
OsAffx.19640.1.S1_at--451--4291Chr12:7312167..7312191 (25 bp)
CCTCGCTAGGAATGATGGCGCCATT
LOC_Os12g13140
OsAffx.19640.1.S1_at--500--6231Chr12:7312180..7312204 (25 bp)
GATGGCGCCATTAGACTGACTGTCA
LOC_Os12g13140
OsAffx.19640.1.S1_at--323--10451Chr12:7312190..7312214 (25 bp)
TTAGACTGACTGTCATCCCAACGAC
LOC_Os12g13140
OsAffx.19640.1.S1_at--124--8951Chr12:7312196..7312220 (25 bp)
TGACTGTCATCCCAACGACGAGCGT
LOC_Os12g13140
OsAffx.19640.1.S1_at--327--5891Chr12:7312215..7312239 (25 bp)
GAGCGTCGTCGATCAAATTGGCATC
LOC_Os12g13140
OsAffx.19640.1.S1_at--859--9691Chr12:7312227..7312251 (25 bp)
TCAAATTGGCATCTATGACAATGAT
LOC_Os12g13140
OsAffx.19640.1.S1_at--311--6073Chr12:7312524..7312548 (25 bp)
GAGTACGAGGTCACGTCCTCCTTGC
LOC_Os12g13140
OsAffx.19640.1.S1_at--996--7811Chr12:7312532..7312556 (25 bp)
GGTCACGTCCTCCTTGCTGTCGCGA
LOC_Os12g13140
Target Sequence 
CCAAATCCGAAGCTCCCACGTTGAATCTTGCCGATGGCGGCGCAACAACAGCGTCGGCGGCGGAGCCCGACAACCGGGAG
GCGGTGGCGTTCGCGTGCCACCTCGCTAGGAATGATGGCGCCATTAGACTGACTGTCATCCCAACGACGAGCGTCGTCGA
TCAAATTGGCATCTATGACAATGATGGCGGTGGCGGCGAGGAGGAGGTGCTGTCCATCGTGGTCCACGACGACGACCCCG
ACAACAGTCGTGGCCTCGTCCCCGGGGACAACCTCACCGCGCAGCAGGAGTACGAGGTCACGTCCTCCTTGCTGTCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis