Browse Element(s) Details


OsAffx.19677.2.S1_x_at

Description tigr:9636.m02606
TID=OsAffx.19677.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2644011/11hypothetical protein
LOC_Os12g149204/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26400OsAffx.15648.1.S1_at1/118+15951462..15953759Zinc knuckle family protein
LOC_Os08g26400OsAffx.19560.1.S1_x_at1/118+15951462..15953759Zinc knuckle family protein
LOC_Os08g26409NANA8+15961112..15961408hypothetical protein
LOC_Os08g26420OsAffx.29368.1.S1_at11/118+15962934..15964091hypothetical protein
LOC_Os08g26430OsAffx.29313.1.S1_at1/118+15970653..15975741transposon protein, putative, Mutator sub-class
LOC_Os08g26430Os.14919.1.S1_at1/118+15970653..15975741transposon protein, putative, Mutator sub-class
LOC_Os08g26440OsAffx.19677.2.S1_x_at11/118+15978151..15978477hypothetical protein
LOC_Os08g26440OsAffx.19677.2.S1_s_at9/118+15978151..15978477hypothetical protein
LOC_Os08g26450Os.27088.1.A1_x_at1/118+15981234..15986207retrotransposon protein, putative, unclassified
LOC_Os08g26460OsAffx.5936.1.S1_at11/118+15987928..15988389expressed protein
LOC_Os08g26470NANA8+15989709..15989978hypothetical protein
LOC_Os08g26480OsAffx.940.1.S1_x_at1/118+15994449..15995411transposon protein, putative, unclassified
LOC_Os08g26490OsAffx.5938.1.S1_at11/118+15997456..15998193hypothetical protein
LOC_Os08g26500OsAffx.30720.1.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26500Os.30832.2.S1_at1/118+16002021..16007204retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19677.2.S1_x_at--42--1516Chr12:8533800..8533824 (25 bp)
ACCTACACGTAGAGGGCGACGACGC
LOC_Os12g14920
OsAffx.19677.2.S1_x_at--464--4611Chr08:15978374..15978398 (25 bp)
GCGACGACGCGAACCCAAAGGTGCT
LOC_Os08g26440
OsAffx.19677.2.S1_x_at--325--2612Chr08:15978363..15978387 (25 bp)
AACCCAAAGGTGCTCACCTATGCGT
LOC_Os08g26440
OsAffx.19677.2.S1_x_at--1006--2311Chr08:15978358..15978382 (25 bp)
AAAGGTGCTCACCTATGCGTCAAAC
LOC_Os08g26440
OsAffx.19677.2.S1_x_at--971--1034Chr12:8533834..8533857 (24 bp)
AGGTGCTCACCTATGCGTCAAACGA
LOC_Os12g14920
OsAffx.19677.2.S1_x_at--908--7314Chr12:8533835..8533859 (25 bp)
GTGCTCACCTATGCGTCAAACGACG
LOC_Os12g14920
OsAffx.19677.2.S1_x_at--1107--3693Chr12:8533843..8533867 (25 bp)
CTATGCGTCAAACGACGACCGACGA
LOC_Os12g14920
OsAffx.19677.2.S1_x_at--165--1931Chr08:15978275..15978299 (25 bp)
ACGGCGGTCCTCCGATGGCCGGCGA
LOC_Os08g26440
OsAffx.19677.2.S1_x_at--359--931Chr08:15978194..15978218 (25 bp)
AGGCAGTGGTGACGGCTAGGGCGAC
LOC_Os08g26440
OsAffx.19677.2.S1_x_at--107--3431Chr08:15978191..15978215 (25 bp)
CAGTGGTGACGGCTAGGGCGACGGC
LOC_Os08g26440
OsAffx.19677.2.S1_x_at--290--8615Chr08:9451315..9451335 (21 bp)
TGGTGACGGCTAGGGCGACGGCGCA
NONE
Target Sequence 
ACCTACACGTAGAGGGCGACGACGCGAACCCAAAGGTGCTCACCTATGCGTCAAACGACGACCGACGACGGCCGGCGACG
AGAGGTGGCGGCGGCGGCGGCTTGGACCTCGCCGACGGCGGTCCTCCGATGGCCGGCGACGACGGGGAGGGGGCGGCCGG
GCCCTCGGTCACGCGCACCCGACGGCGGCGAGAGGAGGCAGTGGTGACGGCTAGGGCGACGGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19677.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis