Browse Element(s) Details


OsAffx.19678.3.A1_at

Description tigr:9636.m02915
TID=OsAffx.19678.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g342302/11hypothetical protein
LOC_Os05g300901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34190OsAffx.15725.1.S1_at11/116+19907065..19907945hypothetical protein
LOC_Os06g34200OsAffx.15726.1.S1_at11/116+19921057..19922261hypothetical protein
LOC_Os06g34210NANA6+19925941..19926312hypothetical protein
LOC_Os06g34220NANA6+19926820..19927721retrotransposon protein, putative, unclassified
LOC_Os06g34230OsAffx.19678.3.A1_at2/116+19930579..19931079hypothetical protein
LOC_Os06g34240OsAffx.435.1.S1_at1/116+19934521..19937636retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g34250NANA6+19938090..19939931hypothetical protein
LOC_Os06g34260OsAffx.27926.1.S1_at11/116+19941281..19942503hypothetical protein
LOC_Os06g34270OsAffx.4998.1.S1_at11/116+19947202..19949049hypothetical protein
LOC_Os06g34280NANA6+19949548..19949978hypothetical protein
LOC_Os06g34290OsAffx.15729.1.S1_at11/116+19951463..19953431hypothetical protein
LOC_Os06g34290OsAffx.15729.1.S1_x_at11/116+19951463..19953431hypothetical protein
LOC_Os06g34300NANA6+19954812..19955737hypothetical protein
LOC_Os06g34310Os.53479.1.S1_x_at2/116+19955919..19960135Zinc knuckle family protein
LOC_Os06g34310OsAffx.15648.1.S1_at1/116+19955919..19960135Zinc knuckle family protein
LOC_Os06g34310Os.25754.2.S1_x_at1/116+19955919..19960135Zinc knuckle family protein
LOC_Os06g34310OsAffx.15536.1.S1_x_at1/116+19955919..19960135Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19678.3.A1_at--1009--6512Chr08:17892038..17892062 (25 bp)
GATTACTTGGCTTGTCGAAAGGATC
NONE
OsAffx.19678.3.A1_at--360--104759Chr12:2083338..2083428 (25 bp)
TTACTTGGCTTGTCGAAAGGATCTC
NONE
OsAffx.19678.3.A1_at--101--71913Chr11:13041305..13041325 (21 bp)
GTCTGGAGTGCCCTCGCCGCCACAA
NONE
OsAffx.19678.3.A1_at--1019--10691Chr08:17892103..17892127 (25 bp)
TTGCCGCGTCAACCGTGTCCGACAT
NONE
OsAffx.19678.3.A1_at--1118--4171Chr08:17892106..17892130 (25 bp)
CCGCGTCAACCGTGTCCGACATTTG
NONE
OsAffx.19678.3.A1_at--255--4651Chr08:17892108..17892132 (25 bp)
GCGTCAACCGTGTCCGACATTTGCC
NONE
OsAffx.19678.3.A1_at--261--7451Chr08:17892117..17892141 (25 bp)
GTGTCCGACATTTGCCCCGTCGAAG
NONE
OsAffx.19678.3.A1_at--947--2071Chr08:17892124..17892148 (25 bp)
ACATTTGCCCCGTCGAAGCGGCGAG
NONE
OsAffx.19678.3.A1_at--689--4611Chr08:17892144..17892168 (25 bp)
GCGAGAGCCGAAGGTGCCACACCAG
NONE
OsAffx.19678.3.A1_at--22--6011Chr08:17892146..17892170 (25 bp)
GAGAGCCGAAGGTGCCACACCAGCT
NONE
OsAffx.19678.3.A1_at--73--4071Chr08:17892175..17892199 (25 bp)
CGAGGGGCGTCGAAGGCTCTACTCC
NONE
Target Sequence 
GATTACTTGGCTTGTCGAAAGGATCTCCGCCCTGGTCTGGAGTGCCCTCGCCGCCACAACTACCCTTGCCGCGTCAACCG
TGTCCGACATTTGCCCCGTCGAAGCGGCGAGAGCCGAAGGTGCCACACCAGCTTCGGCGAGGGGCGTCGAAGGCTCTACT
CC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19678.3.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis